Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ABNP39_RS17620 Genome accession   NZ_CP157882
Coordinates   3731789..3732331 (-) Length   180 a.a.
NCBI ID   WP_021507842.1    Uniprot ID   -
Organism   Pantoea dispersa strain XJ2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3726789..3737331
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABNP39_RS17590 (ABNP39_17560) - 3726945..3727340 (+) 396 WP_031279757.1 transposase -
  ABNP39_RS17595 (ABNP39_17565) - 3728250..3729203 (-) 954 WP_166712220.1 DMT family transporter -
  ABNP39_RS17600 (ABNP39_17570) - 3729276..3730106 (-) 831 WP_058757554.1 AraC family transcriptional regulator -
  ABNP39_RS17605 (ABNP39_17575) - 3730233..3730760 (+) 528 WP_166712218.1 isochorismatase family protein -
  ABNP39_RS17610 (ABNP39_17580) - 3730834..3731277 (+) 444 WP_058774931.1 antitoxin Xre-like helix-turn-helix domain-containing protein -
  ABNP39_RS17615 (ABNP39_17585) - 3731274..3731738 (+) 465 WP_058774932.1 RES domain-containing protein -
  ABNP39_RS17620 (ABNP39_17590) ssb 3731789..3732331 (-) 543 WP_021507842.1 single-stranded DNA-binding protein SSB1 Machinery gene
  ABNP39_RS17625 (ABNP39_17595) uvrA 3732553..3735381 (+) 2829 WP_021507843.1 excinuclease ABC subunit UvrA -
  ABNP39_RS17630 (ABNP39_17600) - 3735658..3736722 (+) 1065 WP_104187843.1 NAD(P)-dependent alcohol dehydrogenase -
  ABNP39_RS17635 (ABNP39_17605) - 3736723..3737079 (-) 357 WP_021507845.1 MmcQ/YjbR family DNA-binding protein -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 19303.24 Da        Isoelectric Point: 5.2358

>NTDB_id=1008876 ABNP39_RS17620 WP_021507842.1 3731789..3732331(-) (ssb) [Pantoea dispersa strain XJ2]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGENKEITEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWQDQSGQDKYTTEVVVNVGGTMQMLGGRQQGGNGGGAPMGGQGGGNNNGWGQPQQPQGGGNQFSGGAQQRPQ
QQSAPANNEPPMDFDDDIPF

Nucleotide


Download         Length: 543 bp        

>NTDB_id=1008876 ABNP39_RS17620 WP_021507842.1 3731789..3732331(-) (ssb) [Pantoea dispersa strain XJ2]
ATGGCCAGTCGTGGCGTAAACAAAGTGATTCTTGTCGGGAATCTGGGTCAGGATCCGGAAGTGCGCTACATGCCGAATGG
TGGCGCGGTAGCCAACATTACGCTGGCCACGTCAGAGAGCTGGCGCGACAAGCAAACCGGTGAAAACAAAGAGATCACCG
AATGGCACCGCGTCGTGCTGTTCGGCAAGCTGGCCGAAGTAGCCGGCGAATATCTGCGTAAAGGTTCGCAGGTCTACATT
GAAGGCCAGCTGCGCACCCGTAAATGGCAGGACCAGAGCGGTCAGGACAAATACACCACCGAAGTGGTGGTGAACGTGGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGCAGGGCGGCAACGGCGGTGGCGCACCCATGGGTGGCCAGGGCGGCGGCA
ACAATAACGGCTGGGGCCAGCCGCAGCAGCCACAGGGTGGGGGCAACCAGTTCAGCGGCGGCGCGCAGCAGCGTCCACAG
CAGCAGAGCGCACCGGCGAACAACGAACCACCAATGGATTTCGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

73.118

100

0.756
  ssb Glaesserella parasuis strain SC1401

58.378

100

0.6
  ssb Neisseria meningitidis MC58

45

100

0.45
  ssb Neisseria gonorrhoeae MS11

45

100

0.45
  ssbA Bacillus subtilis subsp. subtilis str. 168

37.222

100

0.372

Multiple sequence alignment