Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ABNP46_RS20465 Genome accession   NZ_CP157875
Coordinates   4428215..4429729 (+) Length   504 a.a.
NCBI ID   WP_349920289.1    Uniprot ID   -
Organism   Aeromonas veronii strain Ichip_C_3-7     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4423215..4434729
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABNP46_RS20450 (ABNP46_20430) - 4424977..4425909 (-) 933 WP_349920283.1 branched-chain amino acid transaminase -
  ABNP46_RS20455 (ABNP46_20435) ilvM 4425923..4426186 (-) 264 WP_349920285.1 acetolactate synthase 2 small subunit -
  ABNP46_RS20460 (ABNP46_20440) ilvG 4426183..4427829 (-) 1647 WP_349920287.1 acetolactate synthase 2 catalytic subunit -
  ABNP46_RS20465 (ABNP46_20445) comM 4428215..4429729 (+) 1515 WP_349920289.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ABNP46_RS20470 (ABNP46_20450) - 4429863..4430777 (+) 915 WP_349920290.1 acyltransferase -
  ABNP46_RS20475 (ABNP46_20455) - 4430771..4431739 (+) 969 WP_349920292.1 acyltransferase -
  ABNP46_RS20480 (ABNP46_20460) - 4431670..4432179 (-) 510 WP_349920294.1 DUF523 domain-containing protein -
  ABNP46_RS20485 (ABNP46_20465) - 4432176..4432826 (-) 651 WP_349920296.1 DNA mismatch repair protein MutT -
  ABNP46_RS20490 (ABNP46_20470) - 4432901..4433536 (+) 636 WP_349920298.1 nicotinamidase -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 54558.55 Da        Isoelectric Point: 8.0000

>NTDB_id=1008767 ABNP46_RS20465 WP_349920289.1 4428215..4429729(+) (comM) [Aeromonas veronii strain Ichip_C_3-7]
MSLAVVYSRASLGISAPQVTVEVHLSNGLPAFNMVGLPETSVKESRDRVRSALLNGNFEFPSKHITVNLAPADLPKEGGR
FDLAIAIGILAASKQIPAKYLLDHEFLGELALTGEIRPVLGVLPAVLACRDAGRTLLVPRENGQEASLIQDAEVRTAHQL
LAVTAWLAGQYELPLPEPQSTESLPDIPDLQDVIGQSQAKRALEIAAAGSHNLLFIGPPGTGKSMLASRLPGILPPLSEQ
EAQQTAAIHSIGGLTPRAGHWHHRPYRTPHHSASAVALVGGGSHPRPGEISLAHNGVLFLDELPEFERKVLDALREPLET
GHITISRAARQVDFPARFQLIGAMNPSPCGHYGDGQTRASPDQILRYLGKLSGPFLDRFDLTVEVPLLPKGSLTGKAERG
ESSRQIRERVLGARGRMLARGGKLNHLLDSREIEVVCRLSAQDAEFLENAIQRLGLSIRAWHRILRVSRTIADLAGQPDI
GKEHLIEALGYRAMDRLLSRLRSG

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=1008767 ABNP46_RS20465 WP_349920289.1 4428215..4429729(+) (comM) [Aeromonas veronii strain Ichip_C_3-7]
ATGTCATTAGCTGTGGTTTATAGCCGTGCCAGCCTGGGTATTTCTGCCCCTCAGGTAACGGTGGAAGTCCACCTCTCCAA
CGGCCTGCCCGCCTTCAACATGGTGGGGCTGCCGGAAACTTCGGTGAAGGAGTCGCGGGATCGGGTGCGCAGCGCTCTGC
TCAACGGCAACTTCGAGTTTCCCTCCAAGCACATCACGGTCAACCTGGCCCCCGCCGACCTGCCCAAGGAGGGAGGGCGT
TTCGATCTGGCCATCGCCATCGGTATTCTTGCCGCTTCCAAGCAGATACCTGCTAAATACCTTCTTGATCATGAATTTTT
GGGGGAGCTGGCCCTGACCGGCGAGATCCGCCCCGTGCTGGGAGTGTTGCCCGCGGTGCTGGCCTGCCGGGATGCGGGTC
GCACCCTGCTGGTGCCGCGGGAAAACGGCCAAGAGGCCTCCCTCATCCAGGATGCCGAGGTGCGCACCGCCCACCAGCTG
CTGGCGGTCACCGCCTGGCTGGCAGGCCAGTACGAGCTGCCCCTGCCCGAGCCCCAGAGTACGGAGAGCTTGCCCGATAT
CCCGGATCTGCAGGATGTGATCGGCCAGTCCCAGGCCAAGCGGGCGCTGGAGATCGCCGCCGCCGGCAGCCACAATCTGC
TGTTTATCGGGCCACCCGGCACCGGCAAGAGCATGCTGGCGAGCCGCTTGCCCGGTATCTTGCCACCGCTGAGCGAGCAG
GAGGCGCAGCAGACCGCCGCCATCCACTCCATCGGCGGCCTGACCCCGCGGGCCGGTCACTGGCACCACAGGCCCTATCG
AACCCCTCATCACAGCGCCTCCGCCGTGGCCCTGGTCGGCGGTGGCAGTCACCCGAGACCGGGGGAAATTTCCCTCGCCC
ACAACGGAGTGCTGTTTCTGGACGAACTGCCGGAGTTCGAGCGCAAGGTGCTCGATGCCCTGCGCGAGCCGCTGGAGACC
GGCCACATCACCATCAGCCGGGCGGCGCGACAGGTGGATTTTCCCGCCCGTTTCCAGCTGATTGGCGCCATGAACCCCAG
CCCTTGCGGCCACTATGGGGACGGCCAGACCCGCGCCAGCCCGGATCAGATCCTGCGCTACCTCGGCAAGCTCTCCGGCC
CCTTCCTCGATCGCTTTGACCTGACGGTGGAGGTGCCGCTGCTGCCCAAGGGGAGCCTCACCGGCAAGGCGGAGCGCGGC
GAATCGAGCCGGCAGATCCGAGAGCGGGTATTGGGGGCGAGAGGGCGCATGCTGGCTCGCGGCGGGAAGCTCAACCACCT
GCTGGATAGTCGTGAAATCGAAGTCGTTTGTCGATTATCGGCGCAAGATGCCGAGTTTTTGGAGAATGCCATCCAGCGGC
TCGGCCTCAGCATCCGGGCCTGGCACCGCATCCTGCGGGTGTCCCGCACCATTGCCGACCTGGCCGGCCAGCCCGATATC
GGCAAGGAGCACCTGATCGAGGCGCTCGGCTACCGGGCCATGGACAGGCTGCTGTCCCGCCTGCGCAGCGGCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-390)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

63.347

99.603

0.631
  comM Vibrio campbellii strain DS40M4

62.351

99.603

0.621
  comM Haemophilus influenzae Rd KW20

61.22

100

0.617
  comM Glaesserella parasuis strain SC1401

60.552

100

0.609
  comM Legionella pneumophila str. Paris

51.389

100

0.514
  comM Legionella pneumophila strain ERS1305867

51.389

100

0.514
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.58

100

0.46

Multiple sequence alignment