Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ABNP31_RS25375 Genome accession   NZ_CP157874
Coordinates   5688493..5689983 (+) Length   496 a.a.
NCBI ID   WP_100412826.1    Uniprot ID   -
Organism   Pseudomonas asiatica strain C-B8A     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 5683493..5694983
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABNP31_RS25350 (ABNP31_25340) - 5684169..5684864 (+) 696 WP_038410237.1 HAD family hydrolase -
  ABNP31_RS25355 (ABNP31_25345) sutA 5685096..5685425 (-) 330 WP_013974748.1 transcriptional regulator SutA -
  ABNP31_RS25360 (ABNP31_25350) - 5685855..5687186 (-) 1332 WP_025341075.1 ammonium transporter -
  ABNP31_RS25365 (ABNP31_25355) glnK 5687233..5687571 (-) 339 WP_002555808.1 P-II family nitrogen regulator -
  ABNP31_RS25370 (ABNP31_25360) - 5688087..5688353 (+) 267 WP_025341076.1 accessory factor UbiK family protein -
  ABNP31_RS25375 (ABNP31_25365) comM 5688493..5689983 (+) 1491 WP_100412826.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ABNP31_RS25380 (ABNP31_25370) - 5690107..5690475 (-) 369 WP_176240875.1 response regulator -
  ABNP31_RS25385 (ABNP31_25375) - 5690472..5691464 (-) 993 WP_075046734.1 response regulator -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 52808.57 Da        Isoelectric Point: 7.7255

>NTDB_id=1008738 ABNP31_RS25375 WP_100412826.1 5688493..5689983(+) (comM) [Pseudomonas asiatica strain C-B8A]
MSLALVHSRAQVGVQAPAVSVETHLANGLPHLTLVGLPETTVKESKDRVRSAIVNSGLNYPQRRITQNLAPADLPKDGGR
YDLAIALGILAADGQVPMATLAEVECLGELALSGKLRPVQGVLPAALAAREAGRALVVPRENAEEASLAGGLVVYAVGHL
LELVAHLNGQVPLPPYAANGLILQQRPYPDLSEVQGQLAAKRALLLAAAGAHNLLFTGPPGTGKTLLASRLPGLLPPLDE
HEALEVAAIQSVSGHAPLSSWPQRPFRHPHHSASGPALVGGSSRPQPGEITLAHHGVLFLDELPEFERRVLEVLREPLES
GEIVIARARDKVRFPARFQLVAAMNPCPCGYLGDPTGRCRCSTEQIARYRNKLSGPLLDRIDLHLTVARESTTLNNQPCG
ETSADVAAKVAEARELQQRRQGCANAFLDLEGLRRHCGLAAADQAWLEGACERLTLSLRAAHRLLKVARTLADLEGSQAI
GRAHLAEALQYRPGSS

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=1008738 ABNP31_RS25375 WP_100412826.1 5688493..5689983(+) (comM) [Pseudomonas asiatica strain C-B8A]
ATGTCCCTAGCCCTCGTCCACAGCCGCGCCCAGGTGGGCGTGCAGGCACCGGCGGTCAGCGTCGAAACCCACCTGGCCAA
CGGCTTGCCCCATCTCACGCTGGTCGGTCTGCCGGAAACCACGGTCAAAGAGAGCAAGGACCGGGTACGCAGCGCCATCG
TCAACTCCGGTTTGAACTACCCGCAGCGGCGCATCACCCAGAACCTCGCCCCCGCCGACCTGCCCAAGGATGGCGGGCGC
TATGACCTGGCCATTGCCCTGGGTATCCTCGCCGCCGATGGCCAGGTACCAATGGCCACCCTTGCCGAGGTCGAATGCCT
GGGCGAACTGGCACTGTCTGGCAAGTTGCGCCCGGTGCAGGGCGTGCTGCCCGCGGCACTGGCGGCACGCGAAGCAGGCC
GGGCGCTGGTGGTGCCACGGGAAAACGCCGAGGAAGCCAGCCTGGCAGGCGGGCTGGTGGTGTATGCGGTGGGGCACCTG
CTGGAGCTGGTCGCCCACCTGAACGGCCAGGTGCCGTTGCCGCCGTATGCGGCCAACGGCCTGATCCTGCAACAACGCCC
GTACCCGGACCTGAGCGAGGTGCAGGGCCAACTGGCTGCCAAGCGTGCACTGCTGCTAGCGGCGGCCGGGGCACATAACC
TGCTGTTCACCGGGCCTCCCGGTACCGGCAAGACCTTGCTCGCCAGCCGCCTGCCAGGGCTGCTGCCACCGCTGGACGAG
CACGAGGCACTGGAAGTGGCGGCGATCCAGTCGGTCAGCGGCCATGCGCCTCTGAGCAGCTGGCCGCAGCGGCCTTTTCG
CCATCCACACCACTCCGCCTCCGGCCCGGCGCTGGTCGGCGGCAGCAGCCGGCCGCAACCGGGCGAAATCACCCTGGCCC
ACCATGGCGTGCTGTTTCTGGACGAACTGCCGGAATTCGAGCGGCGTGTGCTGGAGGTGTTGCGCGAGCCGTTGGAGTCG
GGCGAGATCGTGATTGCCCGGGCCCGCGACAAGGTGCGCTTCCCGGCACGTTTCCAACTGGTGGCGGCAATGAACCCCTG
CCCTTGCGGCTACCTGGGCGACCCCACTGGCCGCTGCCGCTGCAGTACCGAGCAGATCGCGCGGTATCGCAACAAGCTGT
CCGGGCCGTTGCTGGACCGTATCGACCTGCACCTGACCGTGGCCCGGGAGAGCACCACGCTGAACAACCAGCCCTGCGGC
GAGACCAGTGCCGATGTGGCGGCCAAGGTAGCCGAGGCACGTGAACTGCAACAGCGGCGGCAAGGGTGTGCGAATGCGTT
TCTCGACCTTGAGGGGTTGCGCCGCCATTGTGGCTTGGCAGCGGCGGACCAGGCCTGGCTGGAGGGGGCATGTGAACGGC
TGACCCTGTCGTTGCGCGCGGCACACCGGTTGTTGAAGGTGGCGCGAACGCTGGCGGATCTGGAAGGTAGCCAGGCAATT
GGCCGGGCGCATCTGGCCGAGGCCCTGCAGTACCGGCCGGGGAGCAGTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

55.6

100

0.56
  comM Vibrio campbellii strain DS40M4

55.556

99.798

0.554
  comM Vibrio cholerae strain A1552

55.152

99.798

0.55
  comM Glaesserella parasuis strain SC1401

53.892

100

0.544
  comM Legionella pneumophila str. Paris

49.395

100

0.494
  comM Legionella pneumophila strain ERS1305867

49.395

100

0.494
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.012

100

0.476

Multiple sequence alignment