Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ABNP33_RS17340 Genome accession   NZ_CP157872
Coordinates   3662585..3664072 (+) Length   495 a.a.
NCBI ID   WP_174724485.1    Uniprot ID   -
Organism   Acinetobacter pittii strain bac73     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3657585..3669072
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABNP33_RS17315 (ABNP33_17310) ribD 3658502..3659587 (-) 1086 WP_262440650.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  ABNP33_RS17320 (ABNP33_17315) nrdR 3659603..3660061 (-) 459 WP_086265360.1 transcriptional regulator NrdR -
  ABNP33_RS17325 (ABNP33_17320) amtB 3660220..3661617 (-) 1398 WP_060466392.1 ammonium transporter -
  ABNP33_RS17330 (ABNP33_17325) glnK 3661675..3662013 (-) 339 WP_000780326.1 P-II family nitrogen regulator -
  ABNP33_RS17335 (ABNP33_17330) - 3662292..3662519 (+) 228 WP_002121136.1 accessory factor UbiK family protein -
  ABNP33_RS17340 (ABNP33_17335) comM 3662585..3664072 (+) 1488 WP_174724485.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ABNP33_RS17345 (ABNP33_17340) yieF 3664174..3664719 (+) 546 WP_068615051.1 NADPH-dependent FMN reductase -
  ABNP33_RS17350 (ABNP33_17345) mocR 3664744..3666177 (-) 1434 WP_349913719.1 PLP-dependent aminotransferase family protein -
  ABNP33_RS17355 (ABNP33_17350) - 3666289..3667065 (+) 777 WP_057075994.1 aldolase -
  ABNP33_RS17360 (ABNP33_17355) - 3667081..3667959 (+) 879 WP_262440652.1 dihydrodipicolinate synthase family protein -
  ABNP33_RS17365 (ABNP33_17360) - 3668001..3668813 (-) 813 WP_017385855.1 TorF family putative porin -
  ABNP33_RS17370 (ABNP33_17365) - 3668852..3669040 (-) 189 WP_017385854.1 hypothetical protein -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 54493.54 Da        Isoelectric Point: 7.3646

>NTDB_id=1008715 ABNP33_RS17340 WP_174724485.1 3662585..3664072(+) (comM) [Acinetobacter pittii strain bac73]
MSFSKIYTRGLLGLHAPLIEVEVHVSQGLPSLTIVGLAEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDGSR
LDLPIAIGILIASGQLPENCAEDFELIGELALDGHVRPVSGTLTLAMACQQAKHKMLLPLDNSQDISHLPNLECYPVSHL
KEVCDHFLGIKSLSSIEPATTSNQMPYKFDLADVKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLPSILPPLSN
QETLEVASIYSISNTPHTFGQRPFRAPHHTASAIALVGGGSHPKPGEITLSHLGVLFLDELPEFDRKVLEVLRQPLESKE
IIISRAARQITYPANFQLIAAMNPCPCGYAFNQDSRCQCSPESIKRYQNRISGPLLDRIDLHIDVPPLKAQELQDPTPAE
DSTAVRQRVIYAYEQQMQRQDCLNQALSPKQLEQYAVLDSTSQRMIEMAQQRLNLSARAYHRVLRVARTIADLAQSEMIQ
NPHLTEALSYRGNHS

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=1008715 ABNP33_RS17340 WP_174724485.1 3662585..3664072(+) (comM) [Acinetobacter pittii strain bac73]
ATGTCTTTTTCTAAAATTTATACACGGGGACTTTTAGGTTTACATGCACCTTTGATTGAGGTCGAGGTACATGTGAGTCA
AGGCTTACCTTCTCTTACTATTGTCGGCCTAGCAGAGGCGGCGGTAAGAGAAAGTAAAGACCGCGTTCGCTCAGCCATTA
TTAATAGTGGATTTCAATTTCCAACAAAACGGCTGACCATTAATCTTGCACCAGCAGATTTGCCCAAAGATGGATCACGT
CTAGATTTACCTATTGCTATAGGTATTTTAATTGCATCTGGCCAGCTCCCAGAAAACTGTGCCGAAGATTTTGAATTAAT
TGGTGAATTAGCTTTAGATGGCCATGTAAGGCCAGTGTCAGGCACTTTAACTTTGGCAATGGCGTGTCAACAGGCCAAGC
ATAAAATGCTTTTACCTCTCGATAACAGTCAGGATATTAGCCATTTACCGAATCTTGAATGTTATCCAGTGAGCCATTTA
AAAGAAGTTTGTGATCATTTCTTGGGCATAAAATCACTATCTTCGATTGAACCTGCAACGACCTCAAACCAAATGCCTTA
TAAATTTGATCTGGCAGATGTAAAAGGTCAGCTACGTCCACGTCGCGCACTAGAAATTGCCGCCGCAGGCGGGCACTCGC
TGCTCTTTAAAGGACCACCAGGTACAGGTAAGACTTTACTCGCTTCACGTCTTCCTTCAATTTTGCCACCGCTTTCTAAT
CAGGAAACGCTTGAAGTCGCGAGTATTTATTCTATTTCAAATACACCGCATACCTTTGGTCAGCGTCCATTTCGCGCGCC
CCACCATACAGCATCAGCGATTGCACTAGTTGGGGGCGGTTCACATCCTAAACCGGGTGAAATTACCTTATCTCATTTAG
GGGTTTTGTTTTTAGATGAACTCCCCGAGTTTGACAGAAAAGTTCTAGAGGTCTTACGTCAGCCGCTTGAGTCAAAAGAA
ATCATTATTTCACGTGCAGCTCGGCAAATTACTTATCCTGCAAACTTTCAGCTCATTGCAGCAATGAACCCTTGTCCATG
TGGTTATGCTTTTAATCAAGACAGTCGTTGCCAATGTTCGCCAGAGAGTATCAAGCGCTATCAAAACCGTATATCGGGAC
CATTACTTGACCGTATCGATTTACATATTGATGTCCCGCCTTTAAAAGCTCAGGAACTGCAAGATCCAACGCCTGCTGAA
GACTCTACGGCTGTAAGACAGCGTGTGATTTATGCTTATGAACAACAAATGCAAAGACAAGATTGTTTAAATCAAGCACT
TTCACCGAAACAACTTGAGCAATATGCTGTACTTGATAGTACTTCTCAACGAATGATTGAAATGGCTCAACAACGTTTGA
ATCTGTCGGCTCGTGCTTATCATCGTGTTTTACGGGTTGCTCGTACCATTGCCGATTTGGCGCAAAGTGAGATGATCCAA
AATCCTCATCTTACAGAAGCGCTCTCTTATCGTGGTAATCATTCTTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

50.806

100

0.509
  comM Glaesserella parasuis strain SC1401

50.1

100

0.505
  comM Legionella pneumophila str. Paris

49.398

100

0.497
  comM Legionella pneumophila strain ERS1305867

49.398

100

0.497
  comM Haemophilus influenzae Rd KW20

48.898

100

0.493
  comM Vibrio campbellii strain DS40M4

47.677

100

0.477
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.924

100

0.467

Multiple sequence alignment