Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ABNP36_RS21200 Genome accession   NZ_CP157870
Coordinates   4652354..4653844 (+) Length   496 a.a.
NCBI ID   WP_027913403.1    Uniprot ID   -
Organism   Pseudomonas fulva strain OsEnb_ALM_C17     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4647354..4658844
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABNP36_RS21180 (ABNP36_21160) - 4647738..4649069 (-) 1332 WP_023532646.1 ammonium transporter -
  ABNP36_RS21185 (ABNP36_21165) glnK 4649117..4649455 (-) 339 WP_002555808.1 P-II family nitrogen regulator -
  ABNP36_RS21190 (ABNP36_21170) - 4649819..4650076 (+) 258 WP_028686764.1 accessory factor UbiK family protein -
  ABNP36_RS21195 (ABNP36_21175) - 4650112..4652121 (-) 2010 WP_028686765.1 DUF4034 domain-containing protein -
  ABNP36_RS21200 (ABNP36_21180) comM 4652354..4653844 (+) 1491 WP_027913403.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ABNP36_RS21205 (ABNP36_21185) - 4654057..4654524 (+) 468 WP_027913402.1 helix-turn-helix domain-containing protein -
  ABNP36_RS21210 (ABNP36_21190) - 4654521..4655096 (+) 576 WP_350025565.1 PIN domain-containing protein -
  ABNP36_RS21215 (ABNP36_21195) - 4655276..4656052 (+) 777 WP_027913400.1 alpha/beta hydrolase -
  ABNP36_RS21220 (ABNP36_21200) - 4656052..4656849 (+) 798 WP_059183535.1 SDR family oxidoreductase -
  ABNP36_RS21225 (ABNP36_21205) - 4656978..4657889 (+) 912 WP_027913398.1 LysR substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 52686.41 Da        Isoelectric Point: 7.7103

>NTDB_id=1008646 ABNP36_RS21200 WP_027913403.1 4652354..4653844(+) (comM) [Pseudomonas fulva strain OsEnb_ALM_C17]
MSLALVHSRAQVGVQAPAVSVETHLANGLPHLTLVGLPETTVKESKDRVRSAIVNSGLNYPARRITQNLAPADLPKDGGR
YDLAIALGILAADAQVPVATLAELECLGELALSGALRPVQGVLPAALAAREAGRALVVPRENAEEASLASGLVVYAVGHL
LELVAHLNGQVPLAAYAANGLLLNPRPYPDLSEVQGQLAAKRALLLAAAGAHNLLFTGPPGTGKTLLASRLPGLLPPLDE
HEALEVAAIQSVSGHTPLNSWPQRPFRHPHHSASGPALVGGGSRPQPGEITLAHHGVLFLDELPEFERRVLEVLREPLES
GEIVIARARDKVRFPARFQLVAAMNPCPCGYLGDPTGRCRCNTEQISRYRNKLSGPLLDRIDLHLTVARESTTLNNQPCG
QSSADVALQVAHAREVQQRRQGCANAFLNLDGLRQHCSLAAPDQAWLEGACERLTLSLRAAHRLLKVARTLADLEGCTAI
GRAHLAEALQYRPGSG

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=1008646 ABNP36_RS21200 WP_027913403.1 4652354..4653844(+) (comM) [Pseudomonas fulva strain OsEnb_ALM_C17]
ATGTCTTTAGCCCTTGTTCACAGCCGCGCCCAGGTAGGCGTGCAGGCCCCGGCCGTCAGCGTTGAAACCCACCTGGCCAA
TGGCTTGCCTCATCTCACACTGGTCGGCTTGCCCGAAACCACGGTCAAGGAAAGCAAGGACCGCGTGCGCAGTGCCATCG
TCAACAGTGGCCTGAACTACCCAGCCCGGCGCATCACGCAAAACCTCGCTCCGGCCGACCTGCCCAAGGACGGTGGCCGC
TACGACCTGGCCATCGCCCTGGGCATCCTGGCCGCCGATGCCCAGGTGCCCGTGGCCACCCTGGCCGAGCTCGAATGCCT
GGGCGAACTGGCACTGTCGGGCGCGTTGCGGCCGGTGCAGGGCGTCTTGCCCGCAGCGCTTGCCGCACGCGAGGCGGGGC
GGGCACTGGTAGTGCCCCGTGAAAATGCCGAGGAAGCCAGCCTTGCCAGTGGCCTGGTGGTGTATGCCGTAGGCCATCTA
TTGGAGCTGGTGGCCCACCTGAACGGACAGGTACCGCTAGCTGCCTATGCCGCCAATGGCTTGCTCCTGAACCCTCGCCC
CTATCCCGACCTGAGCGAGGTGCAGGGGCAACTGGCGGCCAAACGCGCGCTGCTACTGGCCGCTGCCGGGGCGCACAACC
TGCTTTTCACCGGGCCGCCAGGTACTGGCAAAACCTTGTTGGCCAGCCGCCTGCCGGGCCTGCTGCCACCGCTGGATGAG
CATGAAGCGCTGGAGGTCGCCGCCATCCAGTCGGTCAGCGGGCACACCCCGCTGAACAGCTGGCCACAACGGCCGTTTCG
CCACCCTCATCATTCCGCCTCCGGACCTGCGCTGGTGGGTGGCGGAAGCCGGCCGCAACCCGGGGAAATCACCTTGGCCC
ACCACGGGGTGCTGTTTCTGGACGAGTTGCCCGAATTCGAGCGCCGGGTACTGGAAGTGCTGCGTGAACCCCTGGAATCT
GGCGAGATCGTAATCGCCAGGGCGCGGGATAAAGTGCGCTTTCCCGCCCGCTTTCAGCTCGTCGCTGCCATGAACCCCTG
CCCTTGCGGCTACCTGGGCGACCCTACAGGGCGATGCCGCTGCAATACCGAGCAGATATCCCGTTATCGCAACAAACTGT
CAGGCCCGCTACTGGACCGGATCGACTTGCACCTGACCGTGGCGCGCGAGAGCACCACGCTCAACAACCAGCCTTGCGGG
CAAAGCAGCGCCGACGTCGCCCTTCAGGTCGCGCACGCCCGGGAGGTGCAACAACGTCGGCAAGGGTGCGCCAATGCATT
CCTCAACCTCGATGGCCTGCGCCAGCACTGTAGCTTGGCAGCACCTGATCAAGCTTGGTTGGAAGGCGCCTGTGAACGAT
TGACGCTGTCGCTGCGAGCAGCACACCGATTGCTCAAGGTCGCCAGAACACTGGCAGACCTCGAGGGATGCACGGCAATT
GGCCGGGCGCACCTGGCTGAGGCCCTGCAGTACCGTCCCGGGAGTGGTTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

55.4

100

0.558
  comM Vibrio campbellii strain DS40M4

55.645

100

0.556
  comM Vibrio cholerae strain A1552

55.354

99.798

0.552
  comM Glaesserella parasuis strain SC1401

53.6

100

0.54
  comM Legionella pneumophila str. Paris

49.899

100

0.5
  comM Legionella pneumophila strain ERS1305867

49.899

100

0.5
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.521

100

0.472

Multiple sequence alignment