Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ABNP41_RS21295 Genome accession   NZ_CP157869
Coordinates   4473835..4474365 (-) Length   176 a.a.
NCBI ID   WP_004936793.1    Uniprot ID   A0AAW6X7L8
Organism   Serratia marcescens strain KS10     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4468835..4479365
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABNP41_RS21275 (ABNP41_21265) - 4469125..4469874 (+) 750 WP_143778449.1 3-oxoacyl-ACP reductase family protein -
  ABNP41_RS21280 (ABNP41_21270) - 4470253..4471251 (-) 999 WP_337055539.1 hypothetical protein -
  ABNP41_RS21285 (ABNP41_21275) - 4471235..4472365 (-) 1131 WP_350024350.1 DUF3696 domain-containing protein -
  ABNP41_RS21290 (ABNP41_21280) - 4472362..4473546 (-) 1185 WP_151265113.1 DUF262 domain-containing protein -
  ABNP41_RS21295 (ABNP41_21285) ssb 4473835..4474365 (-) 531 WP_004936793.1 single-stranded DNA-binding protein SSB1 Machinery gene
  ABNP41_RS21300 (ABNP41_21290) uvrA 4474643..4477471 (+) 2829 WP_015379213.1 excinuclease ABC subunit UvrA -
  ABNP41_RS21305 (ABNP41_21295) - 4477701..4478753 (+) 1053 WP_016930261.1 NAD(P)-dependent alcohol dehydrogenase -
  ABNP41_RS21310 (ABNP41_21300) maa 4478785..4479342 (-) 558 WP_016930262.1 maltose O-acetyltransferase -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18808.71 Da        Isoelectric Point: 5.2358

>NTDB_id=1008621 ABNP41_RS21295 WP_004936793.1 4473835..4474365(-) (ssb) [Serratia marcescens strain KS10]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGSLQTRKWQDQSGQDRYTTEIVVNVGGTMQMLGGRQGGGAPAGQSAGGQGGWGQPQQPQGGNQFSGGQQQSRPAQNSAP
ATSNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=1008621 ABNP41_RS21295 WP_004936793.1 4473835..4474365(-) (ssb) [Serratia marcescens strain KS10]
ATGGCCAGCAGAGGCGTAAACAAAGTAATTCTGGTCGGGAATCTGGGTCAGGATCCAGAAGTCCGTTACATGCCGAACGG
CGGCGCAGTGGCCAACATTACCCTGGCGACCTCCGAAAGCTGGCGTGACAAGGCGACCGGCGAACAGAAAGAGAAGACCG
AATGGCACCGCGTCGTGCTGTTCGGCAAACTGGCCGAAGTGGCGGGCGAATACCTGCGTAAAGGCTCTCAGGTCTACATC
GAAGGCTCCCTGCAGACCCGTAAATGGCAGGATCAGAGCGGCCAGGATCGCTACACCACCGAGATCGTGGTTAACGTCGG
CGGCACCATGCAGATGCTGGGCGGCCGTCAGGGCGGCGGCGCACCGGCAGGTCAATCTGCCGGCGGCCAGGGCGGTTGGG
GCCAGCCTCAGCAGCCACAGGGCGGCAACCAGTTCAGCGGCGGCCAGCAGCAGTCTCGCCCGGCGCAGAACAGCGCACCG
GCGACCAGCAACGAACCACCAATGGATTTCGACGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.243

100

0.784
  ssb Glaesserella parasuis strain SC1401

59.14

100

0.625
  ssb Neisseria meningitidis MC58

46.591

100

0.466
  ssb Neisseria gonorrhoeae MS11

46.591

100

0.466
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.158

100

0.364

Multiple sequence alignment