Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ABNF92_RS08310 Genome accession   NZ_CP157802
Coordinates   1795128..1796660 (-) Length   510 a.a.
NCBI ID   WP_349343882.1    Uniprot ID   A0AAU7MUJ8
Organism   Marinobacter sp. MMG032     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1790128..1801660
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABNF92_RS08280 (ABNF92_08280) metW 1790939..1791538 (+) 600 WP_069184764.1 methionine biosynthesis protein MetW -
  ABNF92_RS08285 (ABNF92_08285) - 1791541..1791996 (+) 456 WP_349343879.1 DUF4426 domain-containing protein -
  ABNF92_RS08290 (ABNF92_08290) rdgB 1792003..1792602 (+) 600 WP_291910114.1 RdgB/HAM1 family non-canonical purine NTP pyrophosphatase -
  ABNF92_RS08295 (ABNF92_08295) hemW 1792608..1793774 (+) 1167 WP_349343880.1 radical SAM family heme chaperone HemW -
  ABNF92_RS08300 (ABNF92_08300) - 1793774..1794307 (+) 534 WP_349343881.1 hypothetical protein -
  ABNF92_RS08305 (ABNF92_08305) trmB 1794325..1795056 (-) 732 WP_153634878.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  ABNF92_RS08310 (ABNF92_08310) comM 1795128..1796660 (-) 1533 WP_349343882.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ABNF92_RS08315 (ABNF92_08315) - 1796724..1796978 (-) 255 WP_069184757.1 accessory factor UbiK family protein -
  ABNF92_RS08320 (ABNF92_08320) glnK 1797360..1797698 (+) 339 WP_008173268.1 P-II family nitrogen regulator -
  ABNF92_RS08325 (ABNF92_08325) - 1797773..1799056 (+) 1284 WP_349343883.1 ammonium transporter -
  ABNF92_RS08330 (ABNF92_08330) speE 1799123..1800004 (-) 882 WP_349343884.1 polyamine aminopropyltransferase -

Sequence

Protein


Download         Length: 510 a.a.        Molecular weight: 53999.82 Da        Isoelectric Point: 7.3032

>NTDB_id=1008369 ABNF92_RS08310 WP_349343882.1 1795128..1796660(-) (comM) [Marinobacter sp. MMG032]
MLAIVHSRASIGVSAPAVTVEVHLSGGLPALSIVGLPETGVRESKERVRSALLNAGFEFPARRITINLAPADLPKEGGRF
DLPIALGILAASGQIPVESLSDCEFLGELSLDGALRPLKGVLPAVLAARQDQRSLLVPHGNAEEAALASQGDVLAAGHLL
AVCEHLSGRARLVPVPRSSLEQAPATQGEVPDLSDVRGQRVPRRALEVAAAGNHNLLFFGPPGTGKSMLASRLPGILPGL
EDAAAMEVASVHSVAGLPIRSGGWREPPFRSPHHTASAVALVGGGSSPRPGEISLAHRGVLFLDELPEFERRVLEVLREP
METGEISISRAARQVNFPARFQVVGAMNPCPCGYSGHPTIECQCTPQQVARYRSKISGPLLDRFDLHVEVPVQGGDILMR
QGGDGETSVTVRERVLAARARQAERGCLNAALSGRDLQSACRLDGTGERLLTGAMEKLGLSARALHRILRVARTLADLEG
CEELGQSHLVEALGYRQLDRQQGRNSVISA

Nucleotide


Download         Length: 1533 bp        

>NTDB_id=1008369 ABNF92_RS08310 WP_349343882.1 1795128..1796660(-) (comM) [Marinobacter sp. MMG032]
ATGCTTGCTATCGTTCATTCCCGCGCCTCAATTGGCGTGTCAGCGCCGGCCGTTACCGTCGAGGTCCATCTTTCCGGCGG
TCTGCCGGCGCTCTCGATCGTGGGCCTGCCGGAAACCGGTGTCCGAGAAAGCAAGGAGCGCGTTCGGAGCGCTCTCCTGA
ACGCCGGCTTCGAGTTTCCTGCCCGCAGAATCACCATTAATCTTGCGCCTGCCGATCTTCCCAAGGAGGGAGGTCGGTTC
GATTTGCCCATCGCTCTGGGCATTCTGGCAGCCTCGGGACAGATCCCGGTGGAGAGTCTTTCCGATTGTGAATTTCTGGG
CGAATTGTCCCTTGATGGTGCATTGAGGCCGCTCAAGGGTGTATTGCCGGCTGTGCTGGCGGCCCGGCAAGATCAGCGGA
GTTTGCTGGTTCCGCATGGCAATGCCGAGGAGGCGGCCCTGGCCAGCCAGGGTGACGTTCTGGCGGCCGGCCACCTGCTG
GCGGTGTGCGAGCATTTGAGTGGCCGCGCCCGCCTGGTGCCAGTGCCGCGATCCTCGCTGGAACAGGCGCCGGCCACTCA
GGGTGAGGTGCCGGATCTGTCGGATGTGCGTGGCCAGCGGGTACCCCGAAGGGCTCTGGAGGTCGCTGCGGCTGGCAACC
ACAATCTTCTGTTCTTCGGTCCACCGGGAACCGGCAAGAGTATGCTCGCCAGTCGGTTGCCCGGCATTCTTCCGGGGCTG
GAGGATGCAGCGGCCATGGAAGTGGCCAGCGTCCATTCGGTGGCCGGGCTTCCGATTCGTTCCGGGGGCTGGCGGGAGCC
GCCGTTCCGATCACCTCACCACACCGCATCGGCCGTCGCTCTGGTGGGCGGTGGAAGCAGCCCCAGGCCTGGTGAAATCT
CCCTCGCGCATCGGGGCGTACTGTTTCTCGACGAGTTGCCAGAATTCGAGCGTCGGGTGCTCGAGGTGTTGCGGGAACCG
ATGGAAACCGGCGAGATTTCGATCAGTCGCGCGGCGCGGCAGGTGAATTTTCCGGCCCGTTTTCAGGTGGTGGGTGCAAT
GAATCCTTGTCCCTGTGGCTATAGCGGTCATCCCACCATTGAGTGTCAGTGTACGCCACAACAGGTCGCGCGGTACCGGT
CGAAAATCTCCGGGCCGCTCCTGGACAGGTTCGATCTCCACGTTGAAGTGCCTGTGCAGGGTGGGGACATACTGATGCGG
CAGGGTGGCGATGGCGAAACCAGCGTCACCGTCCGGGAGCGTGTGTTGGCTGCGAGGGCCCGGCAAGCAGAGCGGGGTTG
CCTGAATGCCGCACTGTCCGGGCGTGATCTGCAGTCCGCATGCCGACTCGATGGCACCGGTGAACGACTGCTCACCGGTG
CGATGGAAAAGCTGGGCCTCTCTGCCCGGGCGTTGCACCGCATATTGCGGGTTGCCAGAACGCTTGCGGATCTGGAGGGC
TGTGAAGAGCTAGGCCAGAGTCATCTGGTTGAAGCGCTGGGTTACCGGCAGCTGGACCGACAGCAGGGTCGCAACTCGGT
GATATCCGCCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-496)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(192-392)

Subunit ChlI of Mg-chelatase (ChlI)

(20-141)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.976

98.431

0.551
  comM Glaesserella parasuis strain SC1401

55.446

99.02

0.549
  comM Vibrio campbellii strain DS40M4

55.666

98.627

0.549
  comM Haemophilus influenzae Rd KW20

54.582

98.431

0.537
  comM Legionella pneumophila str. Paris

48.503

98.235

0.476
  comM Legionella pneumophila strain ERS1305867

48.503

98.235

0.476
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.758

99.804

0.467

Multiple sequence alignment