Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ABL312_RS18430 Genome accession   NZ_CP157793
Coordinates   4116108..4117634 (-) Length   508 a.a.
NCBI ID   WP_349358861.1    Uniprot ID   -
Organism   MAG: Stappia sp. isolate ALCB114379_MAG2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4111108..4122634
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABL312_RS18410 (ABL312_18410) - 4111594..4111896 (+) 303 WP_349358858.1 DUF1330 domain-containing protein -
  ABL312_RS18415 (ABL312_18415) - 4111893..4112369 (+) 477 WP_349358859.1 GNAT family N-acetyltransferase -
  ABL312_RS18420 (ABL312_18420) - 4112498..4113448 (-) 951 WP_374730151.1 GNAT family N-acetyltransferase -
  ABL312_RS18425 (ABL312_18425) - 4113699..4115969 (-) 2271 WP_349358860.1 ATP-binding protein -
  ABL312_RS18430 (ABL312_18430) comM 4116108..4117634 (-) 1527 WP_349358861.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ABL312_RS18435 (ABL312_18435) gshB 4117734..4118696 (-) 963 WP_349358862.1 glutathione synthase -
  ABL312_RS18440 (ABL312_18440) - 4118875..4119252 (-) 378 WP_349358863.1 YraN family protein -
  ABL312_RS18445 (ABL312_18445) - 4119266..4119439 (-) 174 WP_349358864.1 hypothetical protein -
  ABL312_RS18450 (ABL312_18450) rsmI 4119508..4120476 (-) 969 WP_349358865.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  ABL312_RS18455 (ABL312_18455) - 4120741..4121952 (+) 1212 WP_349358866.1 penicillin-binding protein activator -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 53074.12 Da        Isoelectric Point: 7.2815

>NTDB_id=1008341 ABL312_RS18430 WP_349358861.1 4116108..4117634(-) (comM) [MAG: Stappia sp. isolate ALCB114379_MAG2]
MVSRIATVAFQGIEAKPVDVQVQIGPGQVAFTIVGLPDKAVGESRERVRSALLASGLSLPAKRVTVNLAPADLPKEGSHF
DLPIALALMAAMGALPAADLDGYVVLGELALDGTVSPVAGVLPAAIAANAQARGLICPAACGPEAAWADAEMDILAPQSL
IQLANHFKGTQALSRPVPRLNADLAPLPDLSEVRGQESAKRALEIAAAGGHNLLMVGPPGAGKSMLASRLPSILPPLTPK
ELLEVSMVASIAGELADGKLSERRPFRAPHHSASMAALVGGGMRARPGEVSLAHNGVLFLDELPEFQPQVLDSLRQPLES
GETVIVRANHRTTYPSRVQLIAAMNPCRCGHAGEPGHVCKRGERCVTEYQSRLSGPLLDRIDLRIEVPAVTAVDLISPGR
AENSADVAVRVAAARERQIARYAALGLPARTNAQAGARTIEEVAKPDAAGLDLLHSAAESLALSARGYHRILKVARTLAD
LDGADTVGRMHLAEALSYRGASFDRKAA

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=1008341 ABL312_RS18430 WP_349358861.1 4116108..4117634(-) (comM) [MAG: Stappia sp. isolate ALCB114379_MAG2]
ATGGTGTCACGGATCGCGACCGTGGCGTTTCAGGGCATTGAGGCCAAGCCCGTCGACGTGCAGGTGCAGATCGGGCCGGG
CCAGGTGGCCTTCACCATCGTCGGCCTGCCCGACAAGGCGGTGGGCGAAAGCCGCGAGCGCGTGCGTTCCGCGCTGCTTG
CCTCGGGCCTGTCGCTGCCGGCCAAGCGTGTCACGGTCAACCTCGCCCCGGCGGATCTGCCCAAGGAAGGCTCGCATTTC
GACCTGCCGATCGCGCTCGCGTTGATGGCGGCCATGGGCGCGCTGCCGGCCGCCGATCTCGACGGCTACGTGGTGCTCGG
CGAACTGGCACTCGACGGCACCGTGTCGCCGGTCGCCGGGGTGCTGCCGGCGGCGATCGCCGCCAACGCGCAGGCGAGAG
GCCTGATCTGCCCCGCCGCCTGCGGCCCGGAAGCCGCCTGGGCGGATGCGGAGATGGACATTCTCGCCCCGCAATCGCTG
ATCCAGCTCGCCAACCACTTCAAGGGCACGCAGGCGCTGTCGCGCCCCGTGCCCCGGCTCAACGCGGACCTTGCCCCGCT
GCCGGACCTTTCGGAGGTGCGCGGCCAGGAATCGGCCAAGCGCGCGCTGGAGATCGCGGCGGCCGGCGGGCACAATCTGC
TGATGGTGGGACCGCCGGGGGCGGGCAAGTCGATGCTGGCGAGCCGCCTGCCCTCCATCCTTCCGCCGCTGACGCCGAAG
GAACTTCTCGAGGTCTCGATGGTCGCCTCCATCGCCGGGGAACTCGCCGACGGCAAATTGTCGGAGCGCCGGCCGTTTCG
CGCGCCGCACCACTCCGCCTCCATGGCGGCCCTCGTCGGCGGGGGCATGCGCGCCCGCCCCGGCGAGGTGTCGCTCGCCC
ACAACGGGGTGCTGTTTCTCGACGAACTGCCAGAGTTCCAGCCGCAGGTGCTCGACAGCCTGCGCCAGCCGCTGGAAAGC
GGCGAGACGGTGATCGTGCGCGCCAACCACCGCACCACCTATCCCTCGCGCGTGCAGCTGATCGCCGCGATGAACCCCTG
CCGCTGCGGCCATGCGGGCGAGCCGGGCCATGTGTGCAAGCGCGGCGAGCGCTGCGTCACCGAATACCAGTCGCGCCTGT
CGGGGCCGCTGCTCGACCGCATCGACCTGAGGATCGAGGTGCCGGCCGTCACCGCCGTCGATCTGATCAGCCCCGGCCGG
GCGGAAAACTCCGCCGATGTGGCCGTGCGGGTCGCGGCGGCGCGCGAACGGCAGATCGCGCGCTATGCCGCGCTGGGCCT
GCCGGCGCGCACCAACGCCCAGGCCGGCGCGCGCACCATCGAGGAGGTGGCGAAGCCCGATGCCGCCGGGCTGGACCTTC
TGCACAGCGCGGCGGAAAGCCTGGCCCTGTCGGCGCGCGGCTATCACCGCATTCTCAAGGTCGCGCGCACGCTCGCCGAT
CTCGACGGCGCGGACACCGTGGGGCGGATGCATCTCGCCGAGGCGCTGAGCTATCGCGGCGCCTCCTTCGACCGCAAGGC
GGCCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-499)

Subunit ChlI of Mg-chelatase (ChlI)

(20-139)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

50.305

96.654

0.486
  comM Vibrio campbellii strain DS40M4

48.491

97.835

0.474
  comM Haemophilus influenzae Rd KW20

46.964

97.244

0.457
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.747

100

0.453
  comM Glaesserella parasuis strain SC1401

45.968

97.638

0.449
  comM Legionella pneumophila str. Paris

43.293

96.85

0.419
  comM Legionella pneumophila strain ERS1305867

43.293

96.85

0.419

Multiple sequence alignment