Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ABL312_RS07420 Genome accession   NZ_CP157793
Coordinates   1695247..1695831 (-) Length   194 a.a.
NCBI ID   WP_349360749.1    Uniprot ID   -
Organism   MAG: Stappia sp. isolate ALCB114379_MAG2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1690247..1700831
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABL312_RS07390 (ABL312_07390) - 1691422..1692057 (+) 636 WP_349360743.1 MarC family protein -
  ABL312_RS07395 (ABL312_07395) - 1692090..1692644 (-) 555 WP_349360744.1 disulfide bond formation protein B -
  ABL312_RS07400 (ABL312_07400) - 1692658..1692816 (-) 159 WP_349360745.1 DUF5993 family protein -
  ABL312_RS07405 (ABL312_07405) - 1693159..1694115 (+) 957 WP_349360746.1 cation diffusion facilitator family transporter -
  ABL312_RS07410 (ABL312_07410) - 1694166..1694564 (-) 399 WP_349360747.1 DUF2306 domain-containing protein -
  ABL312_RS07415 (ABL312_07415) - 1694561..1695115 (-) 555 WP_349360748.1 mismatch-specific DNA-glycosylase -
  ABL312_RS07420 (ABL312_07420) ssb 1695247..1695831 (-) 585 WP_349360749.1 single-stranded DNA-binding protein Machinery gene
  ABL312_RS07425 (ABL312_07425) uvrA 1696539..1699505 (+) 2967 WP_349360750.1 excinuclease ABC subunit UvrA -
  ABL312_RS07430 (ABL312_07430) - 1699836..1699985 (+) 150 WP_349360751.1 DUF1127 domain-containing protein -
  ABL312_RS07435 (ABL312_07435) - 1700333..1700482 (+) 150 WP_349360752.1 DUF1127 domain-containing protein -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 20194.85 Da        Isoelectric Point: 5.3258

>NTDB_id=1008335 ABL312_RS07420 WP_349360749.1 1695247..1695831(-) (ssb) [MAG: Stappia sp. isolate ALCB114379_MAG2]
MSGSVNKVILVGNLGADPEVRRMQDGRPVVNLRVATSENWRDRNTGERRERTEWHRVVIFNEGLAKVAENYLRKGSKIYV
EGQLQTRKWQDQSGQDRYSTEVVLQGFNSSLTMLDGRGEGGGQGGGGGFGGGQGRSGGGYIDQGPGGYDQGGYDQGGYGG
GQGGGQGGGQGGGQGGGQKGGFGGGGDMDDEIPF

Nucleotide


Download         Length: 585 bp        

>NTDB_id=1008335 ABL312_RS07420 WP_349360749.1 1695247..1695831(-) (ssb) [MAG: Stappia sp. isolate ALCB114379_MAG2]
ATGTCGGGAAGCGTCAACAAGGTGATCCTGGTCGGCAATCTGGGCGCCGATCCGGAAGTCCGCCGCATGCAGGACGGGCG
GCCGGTGGTGAACCTGCGCGTCGCGACGTCCGAGAACTGGCGGGACCGCAACACCGGCGAGCGGCGTGAGCGCACGGAGT
GGCATCGGGTCGTGATCTTCAACGAGGGTCTGGCCAAGGTCGCGGAGAACTATCTGCGCAAGGGCTCCAAGATCTATGTC
GAGGGCCAGTTGCAGACCCGCAAGTGGCAGGACCAGTCGGGTCAGGATCGCTATTCGACCGAGGTCGTGCTGCAGGGGTT
CAACTCCTCGCTGACCATGCTGGACGGACGCGGCGAGGGTGGCGGCCAAGGCGGTGGCGGCGGCTTCGGCGGCGGTCAGG
GCCGCTCGGGCGGCGGCTACATCGACCAGGGGCCTGGCGGTTACGATCAGGGCGGCTACGACCAGGGCGGCTATGGCGGC
GGCCAGGGTGGTGGCCAGGGCGGCGGTCAGGGCGGCGGTCAGGGGGGCGGCCAGAAGGGCGGCTTCGGCGGCGGCGGCGA
CATGGACGACGAGATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

51.282

100

0.515
  ssb Vibrio cholerae strain A1552

49.741

99.485

0.495
  ssb Neisseria meningitidis MC58

37.696

98.454

0.371
  ssb Neisseria gonorrhoeae MS11

37.173

98.454

0.366

Multiple sequence alignment