Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | Q9L42_RS13920 | Genome accession | NZ_CP157743 |
| Coordinates | 3019897..3020379 (-) | Length | 160 a.a. |
| NCBI ID | WP_305907801.1 | Uniprot ID | A0AAU7NR67 |
| Organism | Methylomarinum sp. Ch1-1 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 3014897..3025379
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| Q9L42_RS13890 (Q9L42_013890) | - | 3015148..3015459 (+) | 312 | WP_305907807.1 | DUF1840 domain-containing protein | - |
| Q9L42_RS13895 (Q9L42_013895) | - | 3015641..3015844 (-) | 204 | WP_305907806.1 | hypothetical protein | - |
| Q9L42_RS13900 (Q9L42_013900) | - | 3015944..3016330 (-) | 387 | WP_305907805.1 | hypothetical protein | - |
| Q9L42_RS13905 (Q9L42_013905) | - | 3016331..3016462 (-) | 132 | WP_305907804.1 | hypothetical protein | - |
| Q9L42_RS13910 (Q9L42_013910) | - | 3016784..3017467 (-) | 684 | WP_305907803.1 | NrdJb | - |
| Q9L42_RS13915 (Q9L42_013915) | - | 3017532..3019682 (-) | 2151 | WP_349431262.1 | adenosylcobalamin-dependent ribonucleoside-diphosphate reductase | - |
| Q9L42_RS13920 (Q9L42_013920) | ssb | 3019897..3020379 (-) | 483 | WP_305907801.1 | single-stranded DNA-binding protein | Machinery gene |
| Q9L42_RS13925 (Q9L42_013925) | - | 3020395..3021756 (-) | 1362 | WP_305910193.1 | MFS transporter | - |
| Q9L42_RS13930 (Q9L42_013930) | - | 3021961..3025146 (-) | 3186 | WP_349431263.1 | efflux RND transporter permease subunit | - |
Sequence
Protein
Download Length: 160 a.a. Molecular weight: 17828.58 Da Isoelectric Point: 5.2494
>NTDB_id=1008113 Q9L42_RS13920 WP_305907801.1 3019897..3020379(-) (ssb) [Methylomarinum sp. Ch1-1]
MLNKVMLIGNLGADPEVRYMPSGGAVTNVSLATTRRWKDRQSGERREHTEWHRVVFFNRLAEVAGEYLRKGSQVYVEGRI
QTRKWQDQSGQDRYSTEIIAEEMQMLGSRSGGTANFGDSAQQGGYSAPQSQPSAAPQQQQPSGNTPPPASYDDFDDDIPF
MLNKVMLIGNLGADPEVRYMPSGGAVTNVSLATTRRWKDRQSGERREHTEWHRVVFFNRLAEVAGEYLRKGSQVYVEGRI
QTRKWQDQSGQDRYSTEIIAEEMQMLGSRSGGTANFGDSAQQGGYSAPQSQPSAAPQQQQPSGNTPPPASYDDFDDDIPF
Nucleotide
Download Length: 483 bp
>NTDB_id=1008113 Q9L42_RS13920 WP_305907801.1 3019897..3020379(-) (ssb) [Methylomarinum sp. Ch1-1]
ATGCTTAATAAAGTCATGTTAATCGGTAATCTGGGCGCCGACCCGGAAGTGAGATATATGCCCAGCGGCGGGGCGGTGAC
CAACGTCAGCCTAGCCACAACCCGACGCTGGAAGGACCGACAATCGGGCGAACGCAGGGAACATACCGAATGGCATCGAG
TCGTGTTTTTCAATCGTTTGGCCGAGGTGGCCGGCGAATATCTGCGTAAAGGCAGTCAGGTCTACGTCGAAGGCCGCATT
CAAACCAGAAAATGGCAGGACCAATCCGGCCAGGACCGGTATTCGACCGAAATCATCGCCGAGGAAATGCAAATGCTCGG
CAGCCGCAGCGGTGGCACCGCCAATTTCGGCGATAGTGCCCAGCAGGGCGGCTATTCCGCGCCGCAGTCGCAACCTTCCG
CGGCGCCGCAACAGCAACAACCTTCCGGCAACACACCGCCGCCGGCAAGCTATGATGATTTCGACGACGATATCCCGTTT
TGA
ATGCTTAATAAAGTCATGTTAATCGGTAATCTGGGCGCCGACCCGGAAGTGAGATATATGCCCAGCGGCGGGGCGGTGAC
CAACGTCAGCCTAGCCACAACCCGACGCTGGAAGGACCGACAATCGGGCGAACGCAGGGAACATACCGAATGGCATCGAG
TCGTGTTTTTCAATCGTTTGGCCGAGGTGGCCGGCGAATATCTGCGTAAAGGCAGTCAGGTCTACGTCGAAGGCCGCATT
CAAACCAGAAAATGGCAGGACCAATCCGGCCAGGACCGGTATTCGACCGAAATCATCGCCGAGGAAATGCAAATGCTCGG
CAGCCGCAGCGGTGGCACCGCCAATTTCGGCGATAGTGCCCAGCAGGGCGGCTATTCCGCGCCGCAGTCGCAACCTTCCG
CGGCGCCGCAACAGCAACAACCTTCCGGCAACACACCGCCGCCGGCAAGCTATGATGATTTCGACGACGATATCCCGTTT
TGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
59.322 |
100 |
0.656 |
| ssb | Glaesserella parasuis strain SC1401 |
52.222 |
100 |
0.587 |
| ssb | Neisseria gonorrhoeae MS11 |
50 |
100 |
0.55 |
| ssb | Neisseria meningitidis MC58 |
49.438 |
100 |
0.55 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
33.714 |
100 |
0.369 |