Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ABL841_RS21865 Genome accession   NZ_CP157636
Coordinates   4633912..4635465 (+) Length   517 a.a.
NCBI ID   WP_018906605.1    Uniprot ID   -
Organism   Variovorax paradoxus strain 4MFCol3.1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4628912..4640465
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABL841_RS21845 (ABL841_21815) - 4629698..4630633 (-) 936 WP_018906604.1 SMP-30/gluconolactonase/LRE family protein -
  ABL841_RS21850 (ABL841_21820) - 4630906..4632438 (-) 1533 WP_418148932.1 ammonium transporter -
  ABL841_RS21855 (ABL841_21825) glnK 4632461..4632799 (-) 339 WP_007833403.1 P-II family nitrogen regulator -
  ABL841_RS21860 (ABL841_21830) - 4632870..4633694 (-) 825 WP_012745382.1 TorF family putative porin -
  ABL841_RS21865 (ABL841_21835) comM 4633912..4635465 (+) 1554 WP_018906605.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ABL841_RS21870 (ABL841_21840) - 4635494..4637674 (-) 2181 WP_018906606.1 serine/threonine-protein kinase -
  ABL841_RS21875 (ABL841_21845) tagF 4637706..4638431 (-) 726 WP_012745379.1 type VI secretion system-associated protein TagF -

Sequence

Protein


Download         Length: 517 a.a.        Molecular weight: 54089.83 Da        Isoelectric Point: 8.2056

>NTDB_id=1007914 ABL841_RS21865 WP_018906605.1 4633912..4635465(+) (comM) [Variovorax paradoxus strain 4MFCol3.1]
MSLSLVQSRALLGLEAASVTVEVHLANGLPSFTLVGLAETEVKEARERVRSAIQNAGLEFPNNKKIVVNLAPADLPKDSG
RFDLPIALGILAASGQIQPALLAGHEFAGELSLSGELRPVRGALAMALALHTRGIATRLVLPAASAQEAALVPGSEVYGA
RHLLDVVQRFMPEGAALPQGEEQQQQQPAADGWARVHAAAAAAAPLYADLADVKGHAGAKRALEIAAAGGHSLLMVGEPG
SGKSMLAQRFAGLLPPMSVDEALESAAVASLAGSFSAARWMNRPTSAPHHTSSAVALVGGGSPPRPGEISQAHHGVLFLD
EFPEFARSALEALREPLETGTITIARAARRAEFPARFQLVAAMNPCPCGYLGSTLKACRCTPDQISRYQAKLSGPLLDRI
DLHIEVPAVSAQQLIDAPPGESTASIRTRVVAAREFALQRQGSPNQALQAGAIDKHAALDDAARKFVYNAAAKLGWSARS
THRALKVARTVADLAGAESVGVVHVAEAVQYRRALRN

Nucleotide


Download         Length: 1554 bp        

>NTDB_id=1007914 ABL841_RS21865 WP_018906605.1 4633912..4635465(+) (comM) [Variovorax paradoxus strain 4MFCol3.1]
ATGAGCCTGTCTTTGGTGCAAAGCCGTGCTTTGCTTGGGCTGGAAGCGGCCAGTGTCACGGTCGAGGTGCATCTGGCGAA
CGGCCTGCCGAGCTTCACGCTCGTCGGGCTGGCGGAAACCGAGGTCAAGGAGGCGCGCGAGCGGGTGCGCTCGGCCATCC
AGAACGCCGGCCTGGAGTTTCCGAACAACAAGAAGATCGTCGTCAACCTGGCGCCGGCCGACCTGCCCAAGGACTCCGGC
CGCTTCGACCTGCCGATCGCGCTCGGCATCCTCGCGGCCAGCGGGCAGATCCAGCCTGCGCTGCTGGCGGGCCATGAATT
TGCCGGCGAGCTCTCCCTTTCAGGCGAACTGCGGCCGGTGCGCGGCGCGCTCGCCATGGCGCTGGCCCTGCACACGCGCG
GCATCGCGACAAGGCTGGTGCTGCCCGCCGCCAGCGCCCAGGAAGCGGCGCTGGTGCCCGGCAGCGAGGTGTATGGCGCC
AGGCACCTGCTGGACGTGGTGCAGCGCTTCATGCCCGAGGGCGCCGCGCTGCCGCAGGGCGAGGAACAGCAGCAGCAGCA
GCCCGCCGCCGACGGCTGGGCCCGCGTGCACGCCGCAGCCGCGGCGGCCGCGCCGCTCTACGCCGACCTGGCCGACGTCA
AGGGCCACGCCGGCGCCAAGCGCGCCCTCGAGATCGCCGCCGCGGGCGGACACAGCCTGCTGATGGTCGGCGAGCCCGGC
TCGGGCAAGTCGATGCTGGCGCAGCGCTTTGCCGGCCTGCTGCCGCCCATGAGCGTCGACGAGGCGCTGGAGAGCGCGGC
CGTGGCCAGCCTGGCCGGCAGTTTTTCGGCCGCGCGCTGGATGAACCGGCCGACCTCGGCGCCCCACCACACATCGAGCG
CCGTGGCGCTGGTGGGCGGCGGCTCGCCCCCGCGGCCCGGCGAGATCTCGCAGGCGCACCATGGCGTGCTCTTCCTGGAC
GAATTTCCGGAATTCGCGCGCTCCGCCCTCGAGGCGCTGCGCGAGCCGCTGGAGACGGGCACCATCACCATCGCGCGCGC
CGCCCGTCGCGCCGAGTTTCCGGCGCGCTTCCAGCTGGTCGCGGCCATGAACCCCTGCCCTTGCGGCTACCTGGGCTCGA
CGCTGAAGGCCTGCCGCTGCACGCCGGACCAGATCTCGCGCTACCAGGCCAAGCTCAGCGGCCCGCTGCTGGACCGCATC
GACCTGCACATCGAGGTGCCCGCGGTGTCGGCGCAGCAGCTCATCGATGCGCCGCCCGGCGAATCCACGGCCAGCATCCG
CACCCGCGTGGTGGCCGCGCGCGAGTTCGCGCTGCAGCGCCAGGGCAGCCCCAACCAGGCGCTGCAGGCCGGCGCCATCG
ACAAGCATGCCGCGCTCGACGATGCGGCCCGCAAGTTCGTCTACAACGCCGCCGCCAAGCTCGGCTGGTCGGCGCGCAGC
ACGCACCGCGCGCTCAAGGTGGCGCGCACCGTGGCCGACCTGGCGGGCGCCGAATCGGTGGGGGTGGTGCATGTGGCGGA
GGCGGTGCAGTACCGCAGGGCGCTGCGGAACTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(420-512)

Subunit ChlI of Mg-chelatase (ChlI)

(21-143)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(209-413)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

50.195

99.42

0.499
  comM Legionella pneumophila strain ERS1305867

49.228

100

0.493
  comM Legionella pneumophila str. Paris

49.228

100

0.493
  comM Vibrio campbellii strain DS40M4

49.611

99.42

0.493
  comM Haemophilus influenzae Rd KW20

48.842

100

0.489
  comM Glaesserella parasuis strain SC1401

49.031

99.807

0.489
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.436

100

0.435

Multiple sequence alignment