Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ABL846_RS01065 Genome accession   NZ_CP157632
Coordinates   229353..230906 (-) Length   517 a.a.
NCBI ID   WP_028254191.1    Uniprot ID   -
Organism   Variovorax paradoxus strain 295MFChir4.1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 224353..235906
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABL846_RS01055 (ABL846_01055) tagF 226390..227115 (+) 726 WP_049808425.1 type VI secretion system-associated protein TagF -
  ABL846_RS01060 (ABL846_01060) - 227147..229324 (+) 2178 WP_028254190.1 protein kinase domain-containing protein -
  ABL846_RS01065 (ABL846_01065) comM 229353..230906 (-) 1554 WP_028254191.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ABL846_RS01070 (ABL846_01070) - 231124..231948 (+) 825 WP_012745382.1 TorF family putative porin -
  ABL846_RS01075 (ABL846_01075) glnK 232019..232357 (+) 339 WP_007833403.1 P-II family nitrogen regulator -
  ABL846_RS01080 (ABL846_01080) - 232380..233912 (+) 1533 WP_020610607.1 ammonium transporter -
  ABL846_RS01085 (ABL846_01085) - 234174..235109 (+) 936 WP_018906604.1 SMP-30/gluconolactonase/LRE family protein -

Sequence

Protein


Download         Length: 517 a.a.        Molecular weight: 54020.72 Da        Isoelectric Point: 7.9023

>NTDB_id=1007867 ABL846_RS01065 WP_028254191.1 229353..230906(-) (comM) [Variovorax paradoxus strain 295MFChir4.1]
MSLSLVQSRALLGLEAASVTVEVHLANGLPSFTLVGLAETEVKEARERVRSAIQNAGLEFPNNKKIVVNLAPADLPKDSG
RFDLPIALGILAASGQIQPALLAGHEFAGELSLSGELRPVRGALAMALALHTSGIATRLVLPAASAQEAALVPGSEVYGA
RHLLDVVQRFMPEGAALPQGEEQQQQQPAADGWARVHAAAAAAAPLYADLADVKGHAGAKRALEIAAAGGHSLLMVGEPG
SGKSMLAQRFAGLLPPMSVDEALESAAVASLAGSFSAARWMNRPTSAPHHTSSAVALVGGGSPPRPGEISQAHHGVLFLD
EFPEFARSALEALREPLETGTITIARAARRAEFPARFQLVAAMNPCPCGYLGSTLKACRCTPDQISRYQAKLSGPLLDRI
DLHIEVPAVSAQQLIDAPPGESTASIRTRVVAAREFALQRQGSPNQALQAGAIDKHAALDDAARKFVYNAAAKLGWSARS
THRALKVARTVADLAGAESVGVVHVAEAVQYRRALRN

Nucleotide


Download         Length: 1554 bp        

>NTDB_id=1007867 ABL846_RS01065 WP_028254191.1 229353..230906(-) (comM) [Variovorax paradoxus strain 295MFChir4.1]
ATGAGCCTGTCTTTGGTGCAAAGCCGCGCTTTGCTTGGGCTGGAAGCGGCCAGTGTCACGGTCGAGGTGCATCTGGCGAA
CGGCCTGCCGAGCTTCACGCTCGTCGGGCTGGCGGAAACCGAGGTCAAGGAGGCGCGCGAGCGGGTGCGCTCGGCCATCC
AGAACGCCGGCCTGGAGTTTCCGAACAACAAGAAGATCGTCGTCAACCTGGCGCCGGCCGACCTGCCCAAGGATTCCGGC
CGCTTCGACCTGCCGATCGCGCTCGGCATCCTCGCGGCCAGCGGGCAGATCCAGCCTGCGCTGCTGGCGGGCCATGAATT
TGCCGGCGAGCTCTCCCTTTCAGGCGAACTGCGGCCGGTGCGCGGCGCGCTCGCCATGGCGCTGGCCCTGCACACGAGCG
GCATCGCGACACGGCTGGTGCTGCCCGCCGCAAGCGCCCAGGAAGCGGCGCTGGTGCCCGGCAGCGAGGTGTACGGCGCC
AGGCACCTGCTGGACGTGGTGCAGCGCTTCATGCCCGAGGGCGCCGCGCTGCCGCAAGGCGAGGAACAGCAGCAGCAGCA
GCCCGCCGCCGACGGCTGGGCCCGCGTGCACGCCGCAGCCGCGGCGGCCGCGCCGCTCTATGCCGACCTGGCCGACGTCA
AGGGCCACGCCGGCGCCAAGCGCGCCCTCGAGATCGCCGCCGCGGGCGGGCACAGCCTGCTGATGGTCGGCGAGCCCGGC
TCGGGCAAGTCGATGCTGGCGCAGCGCTTTGCCGGCCTGCTGCCGCCCATGAGCGTCGACGAGGCGCTGGAGAGCGCGGC
CGTGGCCAGCCTGGCCGGCAGTTTTTCGGCCGCGCGCTGGATGAACCGGCCGACCTCGGCGCCCCACCACACATCGAGCG
CCGTGGCGCTGGTGGGCGGCGGCTCGCCCCCGCGGCCCGGCGAGATCTCGCAGGCGCACCATGGCGTGCTCTTCCTAGAC
GAGTTCCCGGAGTTCGCGCGCTCGGCCCTCGAGGCGCTGCGCGAGCCGCTGGAGACGGGCACCATCACCATCGCGCGCGC
CGCCCGTCGCGCCGAGTTTCCGGCGCGCTTCCAGCTGGTCGCGGCCATGAACCCCTGCCCTTGCGGCTACCTGGGCTCGA
CGCTGAAGGCCTGCCGCTGCACGCCGGACCAGATCTCGCGCTACCAGGCCAAGCTCAGCGGCCCGCTGCTGGACCGCATC
GACCTGCACATCGAGGTGCCCGCGGTGTCGGCGCAGCAGCTCATCGATGCGCCGCCCGGCGAATCCACGGCCAGCATCCG
CACCCGCGTGGTGGCCGCGCGCGAGTTCGCGCTGCAGCGCCAGGGCAGCCCCAACCAGGCGCTGCAGGCCGGCGCCATCG
ACAAGCATGCCGCACTCGACGATGCGGCACGCAAGTTCGTCTACAACGCCGCCGCCAAGCTCGGCTGGTCGGCGCGCAGC
ACGCACCGCGCGCTCAAGGTGGCGCGCACCGTGGCCGACCTGGCGGGCGCCGAATCGGTGGGGGTGGTGCATGTGGCGGA
GGCGGTGCAGTACCGCAGGGCGCTGCGGAACTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(420-512)

Subunit ChlI of Mg-chelatase (ChlI)

(21-143)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(209-413)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

50.195

99.42

0.499
  comM Legionella pneumophila strain ERS1305867

49.228

100

0.493
  comM Legionella pneumophila str. Paris

49.228

100

0.493
  comM Vibrio campbellii strain DS40M4

49.611

99.42

0.493
  comM Haemophilus influenzae Rd KW20

49.035

100

0.491
  comM Glaesserella parasuis strain SC1401

49.225

99.807

0.491
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.436

100

0.435

Multiple sequence alignment