Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ABL837_RS01075 Genome accession   NZ_CP157626
Coordinates   231363..232916 (-) Length   517 a.a.
NCBI ID   WP_062363803.1    Uniprot ID   -
Organism   Variovorax paradoxus NBRC 15149     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 226363..237916
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABL837_RS01065 (ABL837_01065) tagF 228406..229131 (+) 726 WP_012745379.1 type VI secretion system-associated protein TagF -
  ABL837_RS01070 (ABL837_01070) - 229163..231334 (+) 2172 WP_012745380.1 serine/threonine-protein kinase -
  ABL837_RS01075 (ABL837_01075) comM 231363..232916 (-) 1554 WP_062363803.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ABL837_RS01080 (ABL837_01080) - 233134..233958 (+) 825 WP_012745382.1 TorF family putative porin -
  ABL837_RS01085 (ABL837_01085) glnK 234029..234367 (+) 339 WP_007833403.1 P-II family nitrogen regulator -
  ABL837_RS01090 (ABL837_01090) - 234390..235922 (+) 1533 WP_020610607.1 ammonium transporter -
  ABL837_RS01095 (ABL837_01095) - 236194..237129 (+) 936 WP_062363801.1 SMP-30/gluconolactonase/LRE family protein -

Sequence

Protein


Download         Length: 517 a.a.        Molecular weight: 54127.88 Da        Isoelectric Point: 8.5134

>NTDB_id=1007811 ABL837_RS01075 WP_062363803.1 231363..232916(-) (comM) [Variovorax paradoxus NBRC 15149]
MSLSLVQSRALLGLEAASVTVEVHLANGLPSFTLVGLAETEVKEARERVRSAIQNAGLEFPNNKKIVVNLAPADLPKDSG
RFDLPIALGILAASGQIQPALLAGHEFAGELSLSGELRPVRGALAMALALHTRGIATRLVLPAASAQEAALVPGSEVYGA
RHLLDVVQRFMPEGAALPQGEEQQQQQPATDGWARVHAAAAAPAPLYADLADVKGHAGAKRALEIAAAGGHSLLMVGEPG
SGKSMLAQRFAGLLPPMSVDEALESAAVASLAGSFSAARWMNRPTSAPHHTSSAVALVGGGSPPRPGEISQAHHGVLLHH
EFPEFARSALEALREPLETGTITIARAARRAEFPTRFQLVAAMNPCPCGYLGSTLKACRCTPDQISRYQAKLSGPLLDRI
DLHIEVPAVSAQQLIDAPPGESTASIRARVVAAREFALQRQGGPNQALQAGAIDKHAALDDAARKFVYNAAAKLGWSARS
THRALKVARTVADLAGAESVGVVHVAEAVQYRRALRN

Nucleotide


Download         Length: 1554 bp        

>NTDB_id=1007811 ABL837_RS01075 WP_062363803.1 231363..232916(-) (comM) [Variovorax paradoxus NBRC 15149]
ATGAGCCTGTCTTTGGTGCAAAGCCGTGCTTTGCTTGGGCTGGAAGCGGCCAGTGTCACGGTCGAGGTGCATCTGGCGAA
CGGCCTGCCGAGCTTCACGCTCGTCGGGTTGGCGGAAACCGAGGTCAAGGAGGCGCGCGAGCGGGTGCGCTCGGCCATCC
AGAACGCCGGCCTGGAGTTTCCGAACAACAAGAAGATCGTCGTCAACCTGGCGCCGGCCGACCTGCCCAAGGATTCCGGC
CGCTTCGACCTGCCGATCGCGCTCGGCATCCTCGCGGCCAGCGGGCAGATCCAGCCCGCGCTGCTGGCGGGCCATGAATT
TGCCGGCGAGCTCTCCCTTTCAGGCGAGCTGCGGCCGGTGCGCGGCGCGCTCGCCATGGCGCTGGCCCTGCATACGCGCG
GCATCGCGACGCGGCTGGTGCTGCCCGCCGCCAGCGCCCAGGAAGCGGCGCTGGTGCCCGGCAGCGAGGTGTATGGCGCC
AGGCACCTGCTGGACGTGGTGCAGCGCTTCATGCCCGAGGGCGCCGCGCTGCCGCAGGGCGAGGAACAGCAGCAGCAGCA
GCCCGCCACGGACGGCTGGGCCCGCGTGCACGCCGCAGCCGCGGCGCCCGCGCCGCTCTATGCCGACCTGGCCGACGTCA
AGGGCCACGCCGGCGCCAAGCGCGCCCTCGAGATCGCCGCCGCGGGCGGGCACAGCCTGCTGATGGTCGGCGAGCCCGGC
TCGGGCAAGTCGATGCTGGCGCAGCGCTTTGCCGGCCTGCTGCCGCCCATGAGCGTCGACGAGGCGCTGGAGAGCGCGGC
CGTGGCCAGCCTGGCCGGCAGTTTCTCGGCCGCGCGCTGGATGAACCGGCCGACCTCGGCGCCCCACCACACATCCAGCG
CCGTGGCGCTGGTGGGCGGCGGCTCGCCCCCGCGGCCCGGCGAAATCTCGCAGGCGCACCACGGCGTGCTCTTGCACCAC
GAATTTCCGGAGTTCGCACGCTCGGCCCTCGAGGCGCTGCGCGAGCCGCTGGAGACGGGCACCATCACCATCGCGCGCGC
CGCCCGTCGCGCCGAATTTCCGACGCGCTTCCAGCTGGTCGCGGCCATGAACCCCTGCCCTTGCGGCTACCTGGGCTCGA
CGCTGAAGGCCTGTCGCTGCACGCCGGACCAGATCTCGCGCTACCAGGCCAAGCTCAGCGGCCCGCTGCTGGACCGTATC
GACCTGCACATCGAGGTGCCCGCGGTGTCGGCGCAGCAGCTCATCGATGCGCCGCCCGGCGAATCCACGGCCAGCATCCG
CGCCCGCGTGGTGGCCGCGCGCGAGTTCGCGCTGCAGCGCCAGGGCGGCCCCAACCAGGCGCTGCAGGCCGGCGCCATCG
ACAAGCATGCCGCGCTCGACGATGCGGCCCGCAAGTTCGTCTACAACGCCGCCGCCAAGCTCGGCTGGTCGGCGCGCAGC
ACGCACCGCGCGCTCAAGGTGGCGCGCACCGTGGCCGACCTGGCGGGCGCCGAATCGGTGGGGGTGGTGCATGTGGCGGA
GGCGGTGCAGTACCGCAGGGCGCTGCGGAACTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(420-512)

Subunit ChlI of Mg-chelatase (ChlI)

(21-143)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(209-413)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

49.709

99.613

0.495
  comM Vibrio campbellii strain DS40M4

48.833

99.42

0.485
  comM Legionella pneumophila strain ERS1305867

48.263

100

0.484
  comM Legionella pneumophila str. Paris

48.263

100

0.484
  comM Glaesserella parasuis strain SC1401

48.256

99.807

0.482
  comM Haemophilus influenzae Rd KW20

48.069

100

0.482
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.366

100

0.429

Multiple sequence alignment