Detailed information    

insolico Bioinformatically predicted

Overview

Name   cclA/cilC   Type   Machinery gene
Locus tag   ABKJ27_RS07185 Genome accession   NZ_CP157578
Coordinates   1517031..1517690 (+) Length   219 a.a.
NCBI ID   WP_410011597.1    Uniprot ID   -
Organism   Streptococcus sp. KHUD_011     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1512031..1522690
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABKJ27_RS07165 (ABKJ27_07180) - 1512122..1513210 (-) 1089 WP_410011595.1 AI-2E family transporter -
  ABKJ27_RS07170 (ABKJ27_07185) - 1513220..1514509 (-) 1290 WP_410011596.1 DUF308 domain-containing protein -
  ABKJ27_RS07175 (ABKJ27_07190) - 1515313..1516458 (+) 1146 WP_150922471.1 low temperature requirement protein A -
  ABKJ27_RS07180 (ABKJ27_07195) - 1516506..1516961 (-) 456 WP_265471982.1 GNAT family N-acetyltransferase -
  ABKJ27_RS07185 (ABKJ27_07200) cclA/cilC 1517031..1517690 (+) 660 WP_410011597.1 prepilin peptidase Machinery gene
  ABKJ27_RS07190 (ABKJ27_07205) trpA 1517662..1518438 (-) 777 WP_084926225.1 tryptophan synthase subunit alpha -
  ABKJ27_RS07195 (ABKJ27_07210) trpB 1518431..1519654 (-) 1224 WP_410011598.1 tryptophan synthase subunit beta -
  ABKJ27_RS07200 (ABKJ27_07215) - 1519632..1520231 (-) 600 WP_410011599.1 phosphoribosylanthranilate isomerase -
  ABKJ27_RS07205 (ABKJ27_07220) trpC 1520218..1520985 (-) 768 WP_410011600.1 indole-3-glycerol phosphate synthase TrpC -
  ABKJ27_RS07210 (ABKJ27_07225) trpD 1520982..1521986 (-) 1005 WP_102211401.1 anthranilate phosphoribosyltransferase -
  ABKJ27_RS07215 (ABKJ27_07230) - 1521997..1522563 (-) 567 WP_000601916.1 aminodeoxychorismate/anthranilate synthase component II -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 25035.28 Da        Isoelectric Point: 8.4922

>NTDB_id=1007472 ABKJ27_RS07185 WP_410011597.1 1517031..1517690(+) (cclA/cilC) [Streptococcus sp. KHUD_011]
MINIYFFLVGSILASFLGLVIDRFPERSIIRPASHCDSCQTRLRPLDLIPILSQVFNRFRCRYCKARYPFWYALFELGLG
ILFLAWSWGWLSLGQVILITAGLTLGIYDFHHQEYPLLVWMTFHLILMVSSGWDLVMIFFLILGMLAHFIDIRMGAGDFL
FLASCALVFSATELLILIQFASATGILAFLLQKKKERLPFVPFLLLAACVIIFGKLLLV

Nucleotide


Download         Length: 660 bp        

>NTDB_id=1007472 ABKJ27_RS07185 WP_410011597.1 1517031..1517690(+) (cclA/cilC) [Streptococcus sp. KHUD_011]
ATGATTAATATTTATTTTTTTCTTGTCGGGAGCATTCTCGCTTCTTTTCTTGGTTTGGTCATTGATCGTTTTCCTGAGCG
ATCCATTATCCGACCAGCTAGTCATTGTGATTCTTGTCAGACTCGCTTGCGTCCCTTAGATTTGATTCCTATTCTCTCGC
AGGTTTTCAATCGTTTTCGCTGTCGCTATTGCAAGGCTCGCTATCCATTCTGGTATGCTCTTTTTGAACTAGGCTTAGGA
ATCCTCTTTCTAGCTTGGTCTTGGGGCTGGCTCTCCTTGGGGCAAGTCATCCTAATCACTGCTGGTTTGACCTTGGGCAT
CTACGACTTTCACCATCAGGAATATCCCTTACTGGTCTGGATGACTTTCCACCTAATCCTCATGGTTTCCTCTGGCTGGG
ATCTGGTCATGATTTTCTTCCTTATCCTTGGAATGTTAGCTCATTTTATCGATATTCGCATGGGCGCAGGGGATTTTCTC
TTTTTAGCTTCTTGCGCTCTCGTCTTTAGCGCAACAGAATTACTCATCTTGATTCAGTTTGCTTCTGCGACGGGCATCCT
AGCCTTTCTCCTGCAAAAGAAAAAGGAAAGACTTCCTTTTGTGCCTTTCCTCTTACTCGCTGCTTGTGTGATTATTTTTG
GTAAGCTACTGCTTGTTTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis SK321

91.781

100

0.918
  cclA/cilC Streptococcus pneumoniae Rx1

89.954

100

0.9
  cclA/cilC Streptococcus pneumoniae D39

89.954

100

0.9
  cclA/cilC Streptococcus pneumoniae R6

89.954

100

0.9
  cclA/cilC Streptococcus pneumoniae TIGR4

89.498

100

0.895
  cclA/cilC Streptococcus mitis NCTC 12261

89.041

100

0.89

Multiple sequence alignment