Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   ABKJ27_RS00045 Genome accession   NZ_CP157578
Coordinates   2939..3697 (-) Length   252 a.a.
NCBI ID   WP_410011773.1    Uniprot ID   -
Organism   Streptococcus sp. KHUD_011     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1..8697
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABKJ27_RS00035 (ABKJ27_00040) dnaN 70..1206 (-) 1137 WP_084950574.1 DNA polymerase III subunit beta -
  ABKJ27_RS00040 (ABKJ27_00045) dnaA 1365..2726 (-) 1362 WP_084950575.1 chromosomal replication initiator protein DnaA -
  ABKJ27_RS00045 (ABKJ27_00050) spo0J 2939..3697 (-) 759 WP_410011773.1 ParB/RepB/Spo0J family partition protein Regulator
  ABKJ27_RS00050 (ABKJ27_00055) htrA 3755..4936 (-) 1182 WP_410011774.1 S1C family serine protease Regulator
  ABKJ27_RS00055 (ABKJ27_00060) rlmH 5120..5599 (+) 480 WP_410011775.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  ABKJ27_RS00065 (ABKJ27_00070) comC/comC2 5883..6005 (+) 123 WP_045612506.1 competence-stimulating peptide ComC Regulator
  ABKJ27_RS00070 (ABKJ27_00075) comD/comD1 6018..7343 (+) 1326 WP_410011776.1 competence system sensor histidine kinase ComD Regulator
  ABKJ27_RS00075 (ABKJ27_00080) comE 7340..8092 (+) 753 WP_410011777.1 competence system response regulator transcription factor ComE Regulator

Sequence

Protein


Download         Length: 252 a.a.        Molecular weight: 28989.30 Da        Isoelectric Point: 6.3017

>NTDB_id=1007421 ABKJ27_RS00045 WP_410011773.1 2939..3697(-) (spo0J) [Streptococcus sp. KHUD_011]
MEKFEMISITDIQKNPYQPRKEFDGEKLDELAQSIKENGVIQPIIVRQSPVIGYEILAGERRYRASLLAGLTSIPAVVKQ
LSDQEMMVQSIIENLQRENLNPIEEARAYESLIEKGFTHAEIADKMGKSRPYISNSIRLLSLPEQILSEVENGKLSQAHA
RSLVGLNKEQQDYFFQRIIEEDISVRKLEALLTEKKQKKLQKTNHFIQNEEEQLKKLLGLDVEIKMSKKDSGKIIISFSN
QEEYSRIINSLK

Nucleotide


Download         Length: 759 bp        

>NTDB_id=1007421 ABKJ27_RS00045 WP_410011773.1 2939..3697(-) (spo0J) [Streptococcus sp. KHUD_011]
ATGGAAAAATTTGAAATGATTTCTATCACGGATATACAAAAAAATCCCTATCAACCTCGAAAAGAATTTGATGGAGAAAA
ACTAGATGAACTAGCACAGTCTATTAAAGAAAATGGGGTCATTCAACCGATTATTGTTCGTCAATCTCCTGTAATTGGTT
ATGAAATCCTTGCAGGAGAGAGACGCTATCGTGCTTCACTTTTAGCTGGTCTAACATCTATCCCAGCTGTTGTTAAACAA
CTCTCAGATCAAGAGATGATGGTCCAGTCCATCATTGAAAATTTACAGAGAGAAAATTTAAATCCAATAGAAGAAGCACG
CGCCTATGAATCTCTCATAGAGAAGGGATTTACCCATGCTGAAATTGCAGATAAAATGGGGAAGTCTCGTCCATATATCA
GCAACTCCATTCGTTTGCTTTCCTTGCCAGAACAGATCCTCTCAGAAGTTGAAAATGGCAAGCTATCACAAGCTCATGCG
CGTTCTCTAGTTGGGTTGAATAAGGAACAACAAGACTATTTCTTTCAACGAATCATCGAGGAAGACATTTCTGTAAGGAA
GTTAGAAGCTCTTCTGACAGAGAAAAAACAAAAGAAACTTCAAAAAACGAATCATTTCATACAAAATGAAGAAGAACAGT
TAAAAAAACTACTCGGATTAGATGTAGAAATCAAAATGTCTAAAAAAGATAGTGGAAAAATCATTATTTCTTTCTCAAAT
CAAGAAGAATACAGTAGAATTATCAACAGCCTGAAATAA

Domains

Predicted by InterproScan.

ParB/Sulfiredoxin domain (ParB_N)

(6-94)

HTH domain found in ParB protein (HTH_ParB)

(144-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

50.198

100

0.504

Multiple sequence alignment