Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   ABLU27_RS02865 Genome accession   NZ_CP157500
Coordinates   472708..473106 (-) Length   132 a.a.
NCBI ID   WP_021214886.1    Uniprot ID   -
Organism   Lactococcus lactis strain 2B-9     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 467708..478106
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABLU27_RS02825 (ABLU27_02825) - 467730..468596 (+) 867 WP_058213299.1 RluA family pseudouridine synthase -
  ABLU27_RS02830 (ABLU27_02830) - 468635..469444 (-) 810 WP_014570791.1 metal ABC transporter permease -
  ABLU27_RS02835 (ABLU27_02835) - 469437..470174 (-) 738 WP_012898617.1 metal ABC transporter ATP-binding protein -
  ABLU27_RS02840 (ABLU27_02840) - 470351..471193 (-) 843 WP_015427160.1 metal ABC transporter substrate-binding protein -
  ABLU27_RS02845 (ABLU27_02845) - 471190..471627 (-) 438 WP_058213216.1 zinc-dependent MarR family transcriptional regulator -
  ABLU27_RS02850 (ABLU27_02850) comGG 471708..471992 (-) 285 WP_406834849.1 competence type IV pilus minor pilin ComGG Machinery gene
  ABLU27_RS02855 (ABLU27_02855) comGF 472031..472477 (-) 447 WP_029344525.1 competence type IV pilus minor pilin ComGF Machinery gene
  ABLU27_RS02860 (ABLU27_02860) comGE 472440..472736 (-) 297 WP_010906316.1 competence type IV pilus minor pilin ComGE Machinery gene
  ABLU27_RS02865 (ABLU27_02865) comGD 472708..473106 (-) 399 WP_021214886.1 competence type IV pilus minor pilin ComGD Machinery gene
  ABLU27_RS02870 (ABLU27_02870) comGC 473099..473482 (-) 384 WP_010906318.1 competence type IV pilus major pilin ComGC Machinery gene
  ABLU27_RS02875 (ABLU27_02875) comGB 473496..474569 (-) 1074 WP_406835453.1 competence type IV pilus assembly protein ComGB Machinery gene
  ABLU27_RS02880 (ABLU27_02880) comGA 474463..475401 (-) 939 WP_058212859.1 competence type IV pilus ATPase ComGA Machinery gene

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 15173.79 Da        Isoelectric Point: 7.9839

>NTDB_id=1007276 ABLU27_RS02865 WP_021214886.1 472708..473106(-) (comGD) [Lactococcus lactis strain 2B-9]
MTKAFTLLESLLVLLIISFITTLFSLEIIQTIHLFKGELFVLQFENFYKRSQEDAALLQKSESLVAKNQELICEDRSITI
PKEVAVKDFTVKFDDKGENSSLQKLTISLPYEKKFITYQLEIGSGKFKKKIS

Nucleotide


Download         Length: 399 bp        

>NTDB_id=1007276 ABLU27_RS02865 WP_021214886.1 472708..473106(-) (comGD) [Lactococcus lactis strain 2B-9]
ATGACTAAAGCATTTACTTTACTAGAGTCTCTTCTAGTTTTGTTGATTATTTCTTTTATCACAACTCTTTTTTCTTTAGA
AATAATACAAACAATCCATCTTTTTAAGGGAGAATTGTTTGTTCTTCAATTTGAAAATTTCTATAAAAGGAGTCAAGAAG
ATGCTGCACTGCTTCAAAAATCTGAAAGTTTAGTTGCTAAAAATCAAGAATTAATCTGTGAAGATAGAAGTATCACAATT
CCAAAGGAGGTAGCAGTTAAAGATTTTACAGTTAAATTTGATGATAAGGGAGAGAATTCTAGCTTACAAAAACTCACAAT
TTCTTTACCTTACGAAAAAAAGTTCATCACTTATCAATTGGAGATAGGCAGTGGAAAATTTAAAAAGAAAATCAGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Lactococcus lactis subsp. cremoris KW2

67.424

100

0.674
  comYD Streptococcus mutans UA140

40.625

96.97

0.394
  comYD Streptococcus mutans UA159

40.625

96.97

0.394
  comYD Streptococcus gordonii str. Challis substr. CH1

40.625

96.97

0.394

Multiple sequence alignment