Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGE   Type   Machinery gene
Locus tag   ABLU27_RS02860 Genome accession   NZ_CP157500
Coordinates   472440..472736 (-) Length   98 a.a.
NCBI ID   WP_010906316.1    Uniprot ID   A0A3N6L9Y1
Organism   Lactococcus lactis strain 2B-9     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 467440..477736
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABLU27_RS02825 (ABLU27_02825) - 467730..468596 (+) 867 WP_058213299.1 RluA family pseudouridine synthase -
  ABLU27_RS02830 (ABLU27_02830) - 468635..469444 (-) 810 WP_014570791.1 metal ABC transporter permease -
  ABLU27_RS02835 (ABLU27_02835) - 469437..470174 (-) 738 WP_012898617.1 metal ABC transporter ATP-binding protein -
  ABLU27_RS02840 (ABLU27_02840) - 470351..471193 (-) 843 WP_015427160.1 metal ABC transporter substrate-binding protein -
  ABLU27_RS02845 (ABLU27_02845) - 471190..471627 (-) 438 WP_058213216.1 zinc-dependent MarR family transcriptional regulator -
  ABLU27_RS02850 (ABLU27_02850) comGG 471708..471992 (-) 285 WP_406834849.1 competence type IV pilus minor pilin ComGG Machinery gene
  ABLU27_RS02855 (ABLU27_02855) comGF 472031..472477 (-) 447 WP_029344525.1 competence type IV pilus minor pilin ComGF Machinery gene
  ABLU27_RS02860 (ABLU27_02860) comGE 472440..472736 (-) 297 WP_010906316.1 competence type IV pilus minor pilin ComGE Machinery gene
  ABLU27_RS02865 (ABLU27_02865) comGD 472708..473106 (-) 399 WP_021214886.1 competence type IV pilus minor pilin ComGD Machinery gene
  ABLU27_RS02870 (ABLU27_02870) comGC 473099..473482 (-) 384 WP_010906318.1 competence type IV pilus major pilin ComGC Machinery gene
  ABLU27_RS02875 (ABLU27_02875) comGB 473496..474569 (-) 1074 WP_406835453.1 competence type IV pilus assembly protein ComGB Machinery gene
  ABLU27_RS02880 (ABLU27_02880) comGA 474463..475401 (-) 939 WP_058212859.1 competence type IV pilus ATPase ComGA Machinery gene

Sequence

Protein


Download         Length: 98 a.a.        Molecular weight: 11076.95 Da        Isoelectric Point: 6.4684

>NTDB_id=1007275 ABLU27_RS02860 WP_010906316.1 472440..472736(-) (comGE) [Lactococcus lactis strain 2B-9]
MENLKRKSVKAYLLLESLISIALLAFLVSFIVSSLVQVRQKDTEENQKIEALNVAQMAIESHLTELSINGSDIKIKENQN
LLIISNHGKEIMRLELQS

Nucleotide


Download         Length: 297 bp        

>NTDB_id=1007275 ABLU27_RS02860 WP_010906316.1 472440..472736(-) (comGE) [Lactococcus lactis strain 2B-9]
GTGGAAAATTTAAAAAGAAAATCAGTTAAGGCATATTTGCTTTTGGAAAGTTTAATTAGTATAGCTCTACTCGCTTTTCT
AGTCAGCTTTATCGTAAGTTCTCTTGTGCAAGTAAGACAAAAAGATACGGAAGAAAATCAAAAGATTGAAGCTTTAAACG
TGGCACAAATGGCGATTGAAAGTCACTTAACAGAATTATCAATCAACGGTTCTGATATAAAGATAAAAGAAAACCAAAAT
TTACTGATTATTAGTAATCATGGAAAGGAAATTATGCGACTTGAACTTCAAAGTTAA

Domains

Predicted by InterproScan.

Type II secretory pathway pseudopilin (ComGE)

(13-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3N6L9Y1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGE Lactococcus lactis subsp. cremoris KW2

68.041

98.98

0.673

Multiple sequence alignment