Detailed information NTG1007008

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: GPW68_RS00315
• Genome accession: NZ_LR738723
• Coordinates: 52789..53790 (+)
• Length: 333 a.a.
• NCBI ID: WP_024405856.1
• Uniprot ID: -
• Organism: Streptococcus suis isolate GD-0088
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 47789..58790

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GPW68_RS00290	-	47839..48417 (+)	579	WP_011921662.1	CPBP family intramembrane glutamic endopeptidase	-
GPW68_RS00295	-	48432..48860 (+)	429	WP_014636188.1	Msa family membrane protein	-
GPW68_RS00300	-	48853..49725 (+)	873	WP_074389011.1	ABC transporter ATP-binding protein	-
GPW68_RS00305	-	49731..50504 (+)	774	WP_012775420.1	membrane protein	-
GPW68_RS00310	-	50507..52219 (+)	1713	WP_074389012.1	ABC transporter ATP-binding protein	-
GPW68_RS11480	-	52321..52494 (+)	174	WP_011921669.1	hypothetical protein	-
GPW68_RS00315	ruvB	52789..53790 (+)	1002	WP_024405856.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
GPW68_RS00320	-	53790..54536 (+)	747	WP_024405857.1	GNAT family N-acetyltransferase	-
GPW68_RS00325	-	54538..55173 (+)	636	WP_024405858.1	HAD-IA family hydrolase	-
GPW68_RS00330	comR	55420..56319 (+)	900	WP_074389013.1	helix-turn-helix domain-containing protein	Regulator
GPW68_RS00340	-	56945..57884 (-)	940	Protein_47	IS4 family transposase	-

Sequence

Protein

• Length: 333 a.a.
• Molecular weight: 37558.04 Da
• Isoelectric Point: 4.4673

>NTDB_id=1007008 GPW68_RS00315 WP_024405856.1 52789..53790(+) (ruvB) [Streptococcus suis isolate GD-0088]
MTNRILDMEQMQDEEYVERTLRPQKLNEYIGQDKVKDQLKIFIEAAKLRDEALDHTLLFGPPGLGKTTMAFVIANELGVN
IKQTSGPVIEKAGDLAALLNDLEPGDVLFIDEIHRMPMAVEEILYSAMEDFYIDIMIGAGEASRSVHLELPPFTLIGATT
RAGMLSNPLRARFGITGHMEYYELADLTEIVERTADIFDMEITHEAAIELARRSRGTPRIANRLLKRVRDFAQIMGDGLI
DDSITDKALTMLDVDREGLDYVDQKILRTMIEMYGGGPVGLSTLSVNIAEERETVEDMYEPYLIQQGFLMRTRTGRVATA
KAYEHLGYPYTEK

Nucleotide

• Length: 1002 bp

>NTDB_id=1007008 GPW68_RS00315 WP_024405856.1 52789..53790(+) (ruvB) [Streptococcus suis isolate GD-0088]
ATGACAAATCGAATTTTAGACATGGAACAAATGCAGGATGAGGAGTACGTAGAACGTACCCTGCGTCCGCAGAAATTAAA
TGAATACATCGGTCAGGACAAGGTCAAGGACCAGCTGAAAATCTTTATCGAGGCGGCCAAGCTCCGTGATGAAGCCTTGG
ACCATACGCTTCTTTTTGGCCCTCCGGGTCTGGGGAAAACCACCATGGCCTTTGTCATTGCCAACGAACTGGGCGTTAAT
ATCAAGCAGACCAGTGGTCCTGTTATTGAAAAAGCAGGTGACTTGGCGGCCCTTCTCAACGACTTGGAGCCTGGCGACGT
CCTCTTTATCGATGAAATCCACCGTATGCCTATGGCGGTCGAGGAAATTCTCTACTCTGCTATGGAGGATTTCTACATCG
ACATCATGATTGGGGCAGGGGAGGCCAGTCGCTCCGTGCATTTGGAGTTACCACCTTTTACCCTGATTGGAGCGACCACT
CGTGCGGGTATGCTGTCCAATCCCCTGCGGGCCCGTTTTGGGATTACCGGGCATATGGAGTATTATGAACTGGCTGATTT
GACGGAGATTGTCGAGCGGACGGCGGATATCTTTGATATGGAGATTACTCATGAAGCTGCTATTGAGCTGGCTCGTCGGT
CTCGTGGAACTCCCCGTATCGCCAACCGTCTGCTCAAGCGGGTGCGGGATTTTGCTCAGATTATGGGTGACGGCCTGATT
GACGATAGCATTACGGACAAGGCTCTGACCATGCTGGACGTGGACCGAGAGGGGCTGGACTATGTGGACCAGAAGATTCT
CCGCACCATGATTGAGATGTACGGCGGCGGTCCCGTCGGCCTCAGCACCCTGTCGGTCAATATCGCCGAGGAGCGTGAGA
CGGTGGAGGACATGTACGAGCCCTACCTGATTCAGCAGGGCTTCCTCATGCGGACACGGACGGGGCGGGTTGCGACAGCC
AAGGCCTACGAGCACTTGGGTTATCCCTATACGGAAAAATAA

Domains

Predicted by InterProScan.

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (21-179)

• RuvB AAA lid domain (AAA_lid_4) (182-255)

• RuvB C-terminal winged helix domain (WHD_RuvB) (257-326)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Streptococcus pneumoniae TIGR4	90.03	99.399	0.895
ruvB	Streptococcus pneumoniae R6	89.728	99.399	0.892
ruvB	Streptococcus pneumoniae D39	89.728	99.399	0.892
ruvB	Bacillus subtilis subsp. subtilis str. 168	58.896	97.898	0.577
ruvB	Helicobacter pylori 26695	51.064	98.799	0.505
ruvB	Synechocystis sp. PCC 6803	50.479	93.994	0.474