Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ABLB95_RS01040 Genome accession   NZ_CP157451
Coordinates   217168..218652 (-) Length   494 a.a.
NCBI ID   WP_348908998.1    Uniprot ID   -
Organism   Acinetobacter radioresistens strain XH1688     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 212168..223652
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABLB95_RS01015 (ABLB95_01015) - 212876..213256 (-) 381 WP_005022921.1 membrane protein -
  ABLB95_RS01020 (ABLB95_01020) - 213365..213763 (+) 399 WP_005022923.1 MAPEG family protein -
  ABLB95_RS01025 (ABLB95_01025) ppa 213882..214418 (+) 537 WP_005017195.1 inorganic diphosphatase -
  ABLB95_RS01030 (ABLB95_01030) - 214515..215783 (-) 1269 WP_348908997.1 OprD family outer membrane porin -
  ABLB95_RS01035 (ABLB95_01035) - 216346..217113 (+) 768 WP_005405856.1 TorF family putative porin -
  ABLB95_RS01040 (ABLB95_01040) comM 217168..218652 (-) 1485 WP_348908998.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ABLB95_RS01045 (ABLB95_01045) - 218716..218943 (-) 228 WP_017400642.1 accessory factor UbiK family protein -
  ABLB95_RS01050 (ABLB95_01050) glnK 219213..219551 (+) 339 WP_005017180.1 P-II family nitrogen regulator -
  ABLB95_RS01055 (ABLB95_01055) - 219610..220992 (+) 1383 WP_005017177.1 ammonium transporter -
  ABLB95_RS01060 (ABLB95_01060) nrdR 221114..221566 (+) 453 WP_005017176.1 transcriptional regulator NrdR -
  ABLB95_RS01065 (ABLB95_01065) ribD 221618..222673 (+) 1056 WP_051005726.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -

Sequence

Protein


Download         Length: 494 a.a.        Molecular weight: 54268.55 Da        Isoelectric Point: 8.6572

>NTDB_id=1006959 ABLB95_RS01040 WP_348908998.1 217168..218652(-) (comM) [Acinetobacter radioresistens strain XH1688]
MSFAKIYTRGVLGLHAPSIEVEVHVSQGLPSLTIVGLPEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDGSR
LDLPIALGILVASGQLPEQSTEQIEFIGELALDGCLRPVSGTLAIAMACQKVRHQLILAEANAMEAAQLPDFQVYGAQHL
KQVCQHLLQQQPLLPVKRKLSEAAQDYKLDLADIKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLPSILPPPNA
QENLEVASIYSIANVQHPFGQRPFRAPHHTASAIALVGGGSQPKPGEITLAHLGVLFLDELPEFDRKVLEVLRQPLESKE
IVISRASRQMTFPANFQLVAAMNPCPCGYAFNQDNRCQCSADAIKRYQNRISGPLLDRIDLHIDVPPLQAHELQQTTPAE
NSDTVRKRVILAYEQQLQRQSCLNQLLSPKQLELHAQLDQSSLRIIEMAQQRLNLSARAYHRVLRVARTIADLALSKDIQ
TSHLSEALSYRSQS

Nucleotide


Download         Length: 1485 bp        

>NTDB_id=1006959 ABLB95_RS01040 WP_348908998.1 217168..218652(-) (comM) [Acinetobacter radioresistens strain XH1688]
ATGTCTTTTGCCAAAATTTACACCCGGGGGGTGCTGGGACTACATGCGCCTTCTATTGAAGTTGAAGTTCATGTGAGTCA
GGGGCTTCCCTCCCTGACTATTGTAGGGCTTCCTGAAGCCGCGGTACGTGAAAGTAAAGATCGGGTTCGCTCGGCGATCA
TTAATAGCGGCTTTCAGTTTCCCACCAAACGCCTTACTATTAACCTGGCTCCTGCCGATTTGCCCAAAGATGGATCACGT
CTGGATCTACCAATTGCCTTGGGGATTTTGGTTGCTTCGGGCCAGCTCCCTGAACAAAGTACAGAACAGATTGAATTTAT
TGGTGAACTGGCTCTAGATGGCTGCTTGCGTCCGGTAAGCGGCACACTGGCAATTGCCATGGCGTGTCAAAAAGTACGGC
ATCAGCTGATACTGGCAGAAGCAAATGCAATGGAAGCAGCGCAGCTCCCTGACTTTCAGGTCTACGGAGCACAGCACCTA
AAACAGGTTTGCCAGCATTTACTACAGCAACAGCCATTATTACCGGTTAAAAGGAAACTATCTGAAGCTGCTCAAGATTA
TAAACTGGATTTGGCAGATATTAAGGGGCAACTGCGCCCACGGCGTGCTTTGGAAATTGCAGCAGCAGGCGGTCACTCTC
TACTTTTTAAGGGCCCTCCTGGAACTGGAAAGACCCTGCTGGCTTCAAGGTTACCCAGCATTTTACCTCCGCCCAATGCC
CAGGAAAATCTTGAAGTTGCCAGTATCTATTCAATTGCCAATGTTCAGCATCCCTTTGGACAACGGCCTTTTCGGGCTCC
ACACCATACTGCATCTGCTATTGCGCTGGTCGGCGGCGGCTCGCAACCCAAGCCTGGTGAAATCACTCTGGCACATTTAG
GTGTTTTATTTCTAGATGAGCTTCCTGAATTTGACCGCAAAGTACTGGAAGTTTTACGTCAGCCACTCGAGTCTAAGGAA
ATTGTTATTTCTCGGGCTTCCCGGCAAATGACTTTTCCGGCCAACTTCCAGTTGGTAGCAGCTATGAATCCTTGTCCATG
TGGTTATGCATTTAATCAGGATAACCGTTGCCAGTGTTCAGCGGATGCAATTAAGCGCTATCAGAACCGTATTTCCGGTC
CATTGCTGGACCGGATTGACCTGCATATTGATGTGCCACCCTTGCAGGCGCATGAACTCCAGCAAACTACACCTGCTGAG
AATTCAGACACAGTCAGGAAACGTGTCATTTTAGCTTATGAACAGCAGCTCCAACGCCAGAGTTGCCTTAACCAGCTGCT
TTCCCCTAAACAGCTCGAACTGCATGCACAGCTGGACCAAAGCTCACTACGTATAATTGAAATGGCACAGCAACGACTCA
ATCTCTCAGCCCGTGCTTATCACCGGGTTTTACGTGTAGCCAGAACAATTGCTGATCTGGCACTTTCCAAAGATATCCAG
ACAAGTCATTTAAGTGAAGCGCTTTCTTACCGCAGTCAGTCCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

52

100

0.526
  comM Vibrio campbellii strain DS40M4

51.4

100

0.52
  comM Glaesserella parasuis strain SC1401

50.797

100

0.516
  comM Vibrio cholerae strain A1552

51.21

100

0.514
  comM Legionella pneumophila str. Paris

50.403

100

0.506
  comM Legionella pneumophila strain ERS1305867

50.403

100

0.506
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.918

100

0.478

Multiple sequence alignment