Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ABLB99_RS17275 Genome accession   NZ_CP157447
Coordinates   3625738..3627225 (+) Length   495 a.a.
NCBI ID   WP_004710972.1    Uniprot ID   -
Organism   Acinetobacter nosocomialis strain XH1727     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3620738..3632225
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABLB99_RS17250 (ABLB99_17245) ribD 3621652..3622737 (-) 1086 WP_106466257.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  ABLB99_RS17255 (ABLB99_17250) nrdR 3622753..3623211 (-) 459 WP_004710970.1 transcriptional regulator NrdR -
  ABLB99_RS17260 (ABLB99_17255) - 3623372..3624769 (-) 1398 WP_002048891.1 ammonium transporter -
  ABLB99_RS17265 (ABLB99_17260) glnK 3624827..3625165 (-) 339 WP_000780326.1 P-II family nitrogen regulator -
  ABLB99_RS17270 (ABLB99_17265) - 3625445..3625672 (+) 228 WP_106466258.1 accessory factor UbiK family protein -
  ABLB99_RS17275 (ABLB99_17270) comM 3625738..3627225 (+) 1488 WP_004710972.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ABLB99_RS17280 (ABLB99_17275) - 3627255..3628679 (-) 1425 WP_106466259.1 PLP-dependent aminotransferase family protein -
  ABLB99_RS17285 (ABLB99_17280) - 3628791..3629567 (+) 777 WP_004883678.1 aldolase -
  ABLB99_RS17290 (ABLB99_17285) - 3629583..3630461 (+) 879 WP_106466260.1 dihydrodipicolinate synthase family protein -
  ABLB99_RS17295 (ABLB99_17290) - 3630504..3631325 (-) 822 WP_002048960.1 TorF family putative porin -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 54595.52 Da        Isoelectric Point: 7.3649

>NTDB_id=1006950 ABLB99_RS17275 WP_004710972.1 3625738..3627225(+) (comM) [Acinetobacter nosocomialis strain XH1727]
MSFSKIYTRGLLGLHAPLIEVEVHVSQGLPSLTIVGLAEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDGSR
LDLPIALGILIASGQLPENCTEDFEFIGELALDGHVRPISGALTLAMACQQAQHKIVLPQDNSQDISHLPNLECYPVSHL
KEVCEHFLGNTKLSQVQSSSRSNDMPYKFDLADVKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLPSILPPLST
QETLEVASIYSISNTPHIFGQRPFRAPHHTASAIALVGGGSHPKPGEITLSHLGVLFLDELPEFDRKVLEVLRQPLESKE
IIISRAARQITYPANFQLIAAMNPCPCGYAFNQDSRCQCSPESIKRYQNRISGPLLDRIDLHIDVPPLKAQELQDPTPAE
DSTTVRQRVIYAYEQQIKRQDCLNQALSPKQLEQFAVLDDASQRMIEMAQQRLNLSARAYHRVLRVARTIADLSQSEMIQ
SPHLTEALSYRGNHS

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=1006950 ABLB99_RS17275 WP_004710972.1 3625738..3627225(+) (comM) [Acinetobacter nosocomialis strain XH1727]
ATGTCTTTTTCTAAAATTTATACTCGGGGACTTTTAGGCTTACATGCGCCTCTCATTGAAGTAGAGGTACATGTGAGTCA
AGGCTTACCTTCTCTAACGATCGTAGGGCTTGCTGAAGCAGCAGTCAGGGAGAGTAAGGACAGGGTTCGCTCAGCAATTA
TTAATAGTGGATTTCAGTTTCCGACTAAACGGCTGACTATTAATCTTGCTCCCGCAGATTTGCCCAAAGATGGTTCACGT
TTAGATTTACCGATTGCATTAGGGATATTAATTGCCTCAGGTCAGCTTCCAGAGAACTGCACTGAAGACTTTGAATTTAT
TGGAGAGTTAGCACTAGATGGTCATGTAAGACCTATTTCAGGTGCTTTAACTTTGGCAATGGCCTGCCAACAAGCCCAGC
ATAAAATTGTTTTACCCCAAGATAATAGTCAGGATATTAGTCATTTACCAAATCTTGAGTGTTATCCGGTTAGTCATTTA
AAAGAAGTTTGTGAACACTTTTTAGGAAATACCAAGCTATCTCAGGTGCAATCATCTTCCCGCTCAAATGACATGCCGTA
TAAATTTGACCTTGCTGATGTAAAAGGTCAGCTACGTCCACGTCGTGCACTGGAAATTGCAGCTGCTGGAGGGCACTCCC
TGCTCTTTAAAGGACCACCGGGTACAGGTAAGACTTTACTCGCCTCACGTCTTCCTTCAATTTTACCACCACTTTCTACT
CAAGAAACGCTTGAAGTTGCGAGTATTTATTCGATTTCAAATACACCGCATATTTTTGGACAGCGCCCTTTTCGTGCACC
CCACCATACAGCCTCAGCAATTGCACTAGTTGGGGGCGGTTCTCATCCTAAACCGGGTGAAATTACCTTATCTCACTTAG
GGGTTCTCTTTTTAGATGAATTACCCGAGTTTGATCGCAAAGTATTAGAAGTCTTACGCCAGCCGCTTGAGTCAAAAGAA
ATTATCATTTCACGGGCAGCCCGGCAAATTACCTATCCTGCCAACTTTCAGCTTATAGCAGCAATGAACCCCTGCCCATG
TGGTTACGCATTTAATCAAGACAGTCGTTGTCAGTGTTCACCCGAAAGTATTAAGCGCTATCAAAATCGTATATCGGGGC
CATTACTTGACCGCATCGATTTACATATCGATGTACCGCCATTAAAAGCTCAGGAACTACAAGATCCAACACCCGCCGAA
GATTCAACAACTGTGCGACAACGTGTGATTTATGCTTATGAACAACAAATAAAAAGGCAGGATTGTTTGAATCAGGCACT
TTCACCGAAACAATTAGAACAATTCGCTGTCCTAGATGACGCGTCACAGCGAATGATTGAAATGGCTCAGCAACGTTTAA
ATTTATCTGCACGTGCTTATCATCGTGTTTTACGGGTTGCTCGCACCATTGCCGATTTGTCTCAAAGTGAGATGATTCAA
AGTCCTCACCTTACAGAAGCACTCTCTTATCGAGGCAATCATTCTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

51.411

100

0.515
  comM Glaesserella parasuis strain SC1401

50.8

100

0.513
  comM Haemophilus influenzae Rd KW20

49.098

100

0.495
  comM Legionella pneumophila str. Paris

48.394

100

0.487
  comM Legionella pneumophila strain ERS1305867

48.394

100

0.487
  comM Vibrio campbellii strain DS40M4

48.485

100

0.485
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.2

100

0.477

Multiple sequence alignment