Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   ABLC01_RS01615 Genome accession   NZ_CP157442
Coordinates   343573..344382 (+) Length   269 a.a.
NCBI ID   WP_005067126.1    Uniprot ID   A0A009NM66
Organism   Acinetobacter pittii strain XH1728     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 338573..349382
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABLC01_RS01580 (ABLC01_01580) - 339131..339286 (-) 156 Protein_302 hypothetical protein -
  ABLC01_RS01585 (ABLC01_01585) rpoZ 339325..339603 (-) 279 WP_002116990.1 DNA-directed RNA polymerase subunit omega -
  ABLC01_RS01590 (ABLC01_01590) gmk 339676..340305 (-) 630 WP_005804544.1 guanylate kinase -
  ABLC01_RS01595 (ABLC01_01595) ispH 340428..341378 (+) 951 WP_002116992.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  ABLC01_RS01600 (ABLC01_01600) fimU 341548..342021 (+) 474 WP_032057265.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  ABLC01_RS01605 (ABLC01_01605) pilV 342015..342575 (+) 561 WP_080777128.1 type IV pilus modification protein PilV Machinery gene
  ABLC01_RS01610 (ABLC01_01610) pilW 342575..343576 (+) 1002 WP_032057268.1 PilW family protein Machinery gene
  ABLC01_RS01615 (ABLC01_01615) pilX 343573..344382 (+) 810 WP_005067126.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  ABLC01_RS01620 (ABLC01_01620) pilY1 344394..348248 (+) 3855 WP_032057269.1 PilC/PilY family type IV pilus protein Machinery gene
  ABLC01_RS01625 (ABLC01_01625) pilY2 348259..348741 (+) 483 WP_002116770.1 type IV pilin protein Machinery gene
  ABLC01_RS01630 (ABLC01_01630) pilE 348738..349163 (+) 426 WP_002117055.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 28531.35 Da        Isoelectric Point: 7.7238

>NTDB_id=1006870 ABLC01_RS01615 WP_005067126.1 343573..344382(+) (pilX) [Acinetobacter pittii strain XH1728]
MTHLIHKSRSKEKGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVSQLNFQSSDTPLELIVQMNPTTLTNITNVI
GAALKEHESNPGAEYNFCYKPVSTATNFAQTRGASLLRAGSANNAVVEDGGVAGFCNLTTDYGSNRQAVVTQVAVSVPTD
AASDIPGSNLPRGTNTSEGTQLPKSMLSTQRIRVITTAFLPAYASTSIETLQRDCLSTSSAKISDNFDTALTAKQTLAEC
LANHNVPFSTQVQEFNYTNKLTQITAPGS

Nucleotide


Download         Length: 810 bp        

>NTDB_id=1006870 ABLC01_RS01615 WP_005067126.1 343573..344382(+) (pilX) [Acinetobacter pittii strain XH1728]
ATGACCCATTTAATTCATAAAAGTCGATCTAAAGAAAAAGGGGCAACCCTTATTGTTGTACTTATTATTTTATTAATTGT
TATTTCTGTAGGTGTTTTAGCAATAAGAGTGGCTATTGTTTCTTTAAAAGTTGCTACCAATAGCCAAGTGAGCCAATTAA
ATTTTCAGTCATCTGACACACCTTTAGAACTCATTGTGCAGATGAATCCTACCACCCTAACTAATATTACCAATGTGATT
GGCGCCGCGCTCAAAGAGCATGAAAGTAACCCAGGCGCAGAATACAACTTTTGTTATAAGCCTGTTTCTACAGCAACAAA
TTTTGCTCAAACCAGAGGTGCAAGTTTACTTCGAGCAGGAAGTGCCAATAATGCGGTTGTCGAAGATGGCGGAGTGGCGG
GTTTCTGCAATTTAACAACTGACTATGGAAGTAATCGTCAAGCAGTGGTTACCCAAGTTGCTGTAAGTGTTCCAACAGAT
GCTGCTAGCGATATCCCAGGTTCAAATTTACCACGAGGAACAAACACCTCGGAAGGTACGCAACTTCCTAAAAGCATGTT
GTCTACGCAACGTATTCGAGTGATCACAACTGCGTTTTTGCCAGCCTATGCTTCTACCTCTATTGAAACTTTACAAAGAG
ATTGCTTAAGCACGAGTTCGGCAAAAATTAGCGACAATTTTGATACCGCATTAACGGCTAAACAAACATTGGCGGAATGT
TTGGCAAATCATAACGTGCCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAACTCACTCAAATTACGGCACC
AGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009NM66

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

89.706

100

0.907

Multiple sequence alignment