Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilW   Type   Machinery gene
Locus tag   ABLC01_RS01610 Genome accession   NZ_CP157442
Coordinates   342575..343576 (+) Length   333 a.a.
NCBI ID   WP_032057268.1    Uniprot ID   A0AAE9M9R4
Organism   Acinetobacter pittii strain XH1728     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 337575..348576
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABLC01_RS01580 (ABLC01_01580) - 339131..339286 (-) 156 Protein_302 hypothetical protein -
  ABLC01_RS01585 (ABLC01_01585) rpoZ 339325..339603 (-) 279 WP_002116990.1 DNA-directed RNA polymerase subunit omega -
  ABLC01_RS01590 (ABLC01_01590) gmk 339676..340305 (-) 630 WP_005804544.1 guanylate kinase -
  ABLC01_RS01595 (ABLC01_01595) ispH 340428..341378 (+) 951 WP_002116992.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  ABLC01_RS01600 (ABLC01_01600) fimU 341548..342021 (+) 474 WP_032057265.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  ABLC01_RS01605 (ABLC01_01605) pilV 342015..342575 (+) 561 WP_080777128.1 type IV pilus modification protein PilV Machinery gene
  ABLC01_RS01610 (ABLC01_01610) pilW 342575..343576 (+) 1002 WP_032057268.1 PilW family protein Machinery gene
  ABLC01_RS01615 (ABLC01_01615) pilX 343573..344382 (+) 810 WP_005067126.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  ABLC01_RS01620 (ABLC01_01620) pilY1 344394..348248 (+) 3855 WP_032057269.1 PilC/PilY family type IV pilus protein Machinery gene

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 35786.44 Da        Isoelectric Point: 6.6395

>NTDB_id=1006869 ABLC01_RS01610 WP_032057268.1 342575..343576(+) (pilW) [Acinetobacter pittii strain XH1728]
MAHSFVSWKQRGFTLIELMVALALGLILVAAATQLFIGGLLSSRLQKANAEIQDSGIFGLEYIARDIRLLNYGNVTNPIL
TDTTPWGGVVLTGSTATNNNNVNFVPNVGTNTYIADTLLSRGAGDTVSTVSNHWKGLSNIQNSSNAVVQSDQLTIQFIAP
TNMTNCEGVNVLAGDLIVERYFLRLDSNGSSQQDYALACDANTPSAVATAQPTTIAGLGDAGQIVLPRIDHFHVLFGAKN
AAGNFAYYTIPQYRAAAQAARDATPSVMPPRILSIQISVLARSTNNAQSKAIDPEQSFFMLDQTVHASDNTTRFLRRTYN
LTIALRNAMGESL

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=1006869 ABLC01_RS01610 WP_032057268.1 342575..343576(+) (pilW) [Acinetobacter pittii strain XH1728]
ATGGCTCACTCATTTGTATCGTGGAAACAACGAGGCTTTACATTAATTGAGCTGATGGTGGCATTGGCTTTAGGTCTAAT
TTTGGTGGCCGCGGCGACTCAATTATTTATTGGTGGACTTCTATCAAGTCGTCTACAAAAAGCAAATGCTGAAATACAAG
ATAGCGGTATTTTTGGATTGGAATATATTGCCCGAGATATACGCCTTCTAAATTATGGGAATGTAACCAATCCAATATTA
ACTGATACAACCCCTTGGGGTGGTGTTGTATTAACTGGCTCAACTGCAACCAATAATAACAATGTTAATTTTGTCCCTAA
CGTTGGAACAAATACCTATATTGCTGACACATTACTCAGTCGTGGTGCCGGCGATACGGTGAGTACCGTGAGTAATCATT
GGAAAGGTCTTTCAAATATACAGAACAGTTCAAATGCAGTTGTGCAAAGTGATCAATTGACTATCCAATTTATTGCGCCT
ACGAATATGACCAATTGTGAAGGTGTGAATGTACTTGCAGGTGATTTAATTGTAGAGCGTTATTTTTTACGTCTGGATAG
TAATGGTAGTTCCCAGCAAGATTATGCTCTTGCATGTGATGCAAATACTCCCTCAGCTGTAGCCACAGCTCAACCGACTA
CTATTGCTGGGTTGGGCGACGCTGGTCAAATTGTATTGCCGCGTATTGATCATTTCCATGTGCTGTTTGGTGCAAAAAAT
GCGGCTGGCAATTTTGCTTATTATACCATTCCCCAATATCGCGCTGCTGCACAGGCTGCTCGAGATGCTACACCATCTGT
GATGCCGCCACGAATTCTTTCAATACAAATATCTGTATTAGCGCGCTCTACTAATAATGCCCAAAGCAAAGCAATAGATC
CTGAGCAATCTTTTTTTATGTTAGATCAAACCGTGCATGCTTCTGATAATACAACTCGATTCTTACGCCGCACTTATAAC
TTAACAATTGCTCTACGCAACGCGATGGGGGAAAGTCTATGA

Domains

Predicted by InterproScan.

Type IV Pilus-assembly protein W (PilW)

(181-327)

Prokaryotic N-terminal methylation motif (N_methyl)

(9-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilW Acinetobacter baumannii D1279779

85.586

100

0.856

Multiple sequence alignment