Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   ABLC01_RS01600 Genome accession   NZ_CP157442
Coordinates   341548..342021 (+) Length   157 a.a.
NCBI ID   WP_032057265.1    Uniprot ID   A0AAE9M926
Organism   Acinetobacter pittii strain XH1728     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 336548..347021
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABLC01_RS01575 (ABLC01_01575) spoT 337010..339115 (-) 2106 WP_032057263.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  ABLC01_RS01580 (ABLC01_01580) - 339131..339286 (-) 156 Protein_302 hypothetical protein -
  ABLC01_RS01585 (ABLC01_01585) rpoZ 339325..339603 (-) 279 WP_002116990.1 DNA-directed RNA polymerase subunit omega -
  ABLC01_RS01590 (ABLC01_01590) gmk 339676..340305 (-) 630 WP_005804544.1 guanylate kinase -
  ABLC01_RS01595 (ABLC01_01595) ispH 340428..341378 (+) 951 WP_002116992.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  ABLC01_RS01600 (ABLC01_01600) fimU 341548..342021 (+) 474 WP_032057265.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  ABLC01_RS01605 (ABLC01_01605) pilV 342015..342575 (+) 561 WP_080777128.1 type IV pilus modification protein PilV Machinery gene
  ABLC01_RS01610 (ABLC01_01610) pilW 342575..343576 (+) 1002 WP_032057268.1 PilW family protein Machinery gene
  ABLC01_RS01615 (ABLC01_01615) pilX 343573..344382 (+) 810 WP_005067126.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16882.57 Da        Isoelectric Point: 7.7942

>NTDB_id=1006867 ABLC01_RS01600 WP_032057265.1 341548..342021(+) (fimU) [Acinetobacter pittii strain XH1728]
MRGIIPQDGFTLVELMVTIAVMAIIAMMAAPSMSNLLESKRLDGNQRDLINTLSEAKSQAILGRQDVSINLNSTALNTPT
SLNWKADSNNSLELKNIAADGTQSSLTATTLTFNANGVITNIAQDTLLSICNSKINKKKILILTKLGTLIFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=1006867 ABLC01_RS01600 WP_032057265.1 341548..342021(+) (fimU) [Acinetobacter pittii strain XH1728]
ATGAGGGGAATTATTCCACAAGACGGGTTCACCTTGGTTGAGCTTATGGTGACGATTGCGGTCATGGCTATTATCGCGAT
GATGGCCGCGCCATCTATGTCGAATTTATTAGAAAGCAAACGACTAGATGGAAACCAACGAGATCTAATCAATACTTTAT
CGGAAGCAAAGAGCCAAGCCATACTTGGTCGACAAGACGTTTCTATTAATCTGAATTCAACAGCTTTAAATACTCCCACT
TCCTTGAATTGGAAAGCTGATTCCAATAACAGTCTTGAGCTTAAAAATATCGCTGCTGATGGTACGCAGAGTTCGTTAAC
AGCGACGACTTTAACTTTTAATGCGAATGGGGTGATAACCAATATCGCCCAAGACACACTTTTATCTATCTGTAATTCAA
AAATAAATAAAAAGAAAATTCTTATTCTAACAAAGCTTGGCACATTAATTTTTAAAGCTGAGGAGACATGTTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)

Type II transport protein GspH (GspH)

(47-135)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

87.898

100

0.879

Multiple sequence alignment