Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   ABLB98_RS12845 Genome accession   NZ_CP157435
Coordinates   2676700..2678853 (-) Length   717 a.a.
NCBI ID   WP_348882409.1    Uniprot ID   A0AB39KM78
Organism   Acinetobacter sp. XH1639     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2671700..2683853
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABLB98_RS12830 (ABLB98_12825) - 2674130..2674996 (-) 867 WP_348882394.1 hypothetical protein -
  ABLB98_RS12835 (ABLB98_12830) aroB 2675016..2676098 (-) 1083 WP_004660157.1 3-dehydroquinate synthase -
  ABLB98_RS12840 (ABLB98_12835) aroK 2676123..2676689 (-) 567 WP_087535970.1 shikimate kinase AroK -
  ABLB98_RS12845 (ABLB98_12840) pilQ 2676700..2678853 (-) 2154 WP_348882409.1 type IV pilus secretin PilQ Machinery gene
  ABLB98_RS12850 (ABLB98_12845) pilP 2678915..2679442 (-) 528 WP_249570974.1 pilus assembly protein PilP Machinery gene
  ABLB98_RS12855 (ABLB98_12850) pilO 2679442..2680191 (-) 750 WP_348882395.1 type 4a pilus biogenesis protein PilO Machinery gene
  ABLB98_RS12860 (ABLB98_12855) pilN 2680188..2680829 (-) 642 WP_348882396.1 PilN domain-containing protein Machinery gene
  ABLB98_RS12865 (ABLB98_12860) comM 2680829..2681887 (-) 1059 WP_348882397.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 717 a.a.        Molecular weight: 78145.69 Da        Isoelectric Point: 6.7753

>NTDB_id=1006853 ABLB98_RS12845 WP_348882409.1 2676700..2678853(-) (pilQ) [Acinetobacter sp. XH1639]
MNHAFRQFSMGAVAIAIMQVASAQVSMTNIVPMSLADQGTEIRIMFNGLPPQPQAYQLEQPSRLILDFDKTQQNLKQASI
PVSTNEASTIDVAADDQRSRLVVNLKEAGAFTTRVEGNTFILKINAVQPVNAVRNATVVRQSQQGVSNIGFQRGKDGEGL
VAIDLLGNNTPVDVQQQGSKIVVRTMGNKIPAHLARRLNTNDFATPVASVDAYNDKGNGVITIQSAGSYEYMAYQAENKL
TISLKRPEDKSSPKAKAQVYTGNKISLDFQDIEVRRVLQLLADFTGINLVAADTVQGNITLRLKDVPWDQALDIVLKTKN
LDKRRNGNVIWIAPVSELIKSEEEEAKAIAQSVKLAPLQTEYIRLSYAKATDLEKLITQGKNKTNNSGGNTITQNASPND
PLGDSVGSLLSPRGTISTDPRTNTLIINDTSQKIDQIRKMVDLLDVSVKQVMIEARIVSASTDFTKEMGVKWGVLSQGIT
NNSNLLVGGSDTTLWNLREPEKDSETGGYKYTIERPDNLNVDLGATAVGASRIAFGLISLSDFMLDLELSAVQADGYGEV
ISTPKVMTADKQTAKIESGSQVPFSSSTGTGANATPKIEFKDVVLSLDVTPSITPDGKVQMNLDIKKDSIAGVTPQGQFY
FNKNMVNTNVLVNNGETVVLGGIFEQENLNKQTKVPFLGDLPYVGKLFRRDSKTENKRELLIFVTPRIVNDTLTRNH

Nucleotide


Download         Length: 2154 bp        

>NTDB_id=1006853 ABLB98_RS12845 WP_348882409.1 2676700..2678853(-) (pilQ) [Acinetobacter sp. XH1639]
ATGAATCATGCATTCCGTCAATTTTCAATGGGTGCCGTGGCGATTGCGATTATGCAAGTTGCATCTGCACAAGTGAGTAT
GACGAATATTGTTCCAATGAGTTTGGCTGACCAAGGTACAGAAATCCGTATTATGTTTAACGGTTTGCCTCCACAGCCAC
AGGCTTATCAATTGGAACAACCCTCTCGATTGATTTTAGATTTTGATAAAACGCAACAAAATTTGAAACAGGCATCAATA
CCAGTATCAACTAATGAAGCATCAACAATTGATGTTGCAGCTGATGATCAGCGTTCACGTCTAGTTGTTAATTTAAAGGA
AGCAGGAGCATTTACGACACGTGTTGAAGGGAACACGTTTATTCTTAAAATAAATGCAGTTCAACCAGTAAACGCTGTTC
GTAATGCTACGGTTGTCAGACAATCACAGCAAGGTGTATCAAATATTGGTTTCCAGCGCGGTAAGGATGGCGAGGGGTTG
GTTGCTATTGACCTGTTGGGAAATAACACACCTGTCGATGTACAGCAGCAAGGTAGTAAGATTGTGGTGCGAACAATGGG
GAACAAAATTCCAGCCCATTTGGCGCGTCGTCTAAATACCAATGATTTTGCTACACCTGTCGCAAGTGTAGATGCTTATA
ATGATAAAGGAAATGGTGTGATCACCATTCAGTCTGCTGGTAGTTATGAATATATGGCTTACCAAGCGGAAAATAAATTA
ACGATTAGTCTTAAGCGTCCAGAAGATAAATCTTCTCCGAAAGCTAAAGCCCAAGTCTATACTGGGAATAAAATTTCATT
AGACTTTCAGGATATAGAAGTACGTCGAGTCTTGCAGCTGTTGGCTGATTTCACCGGCATAAACCTGGTTGCTGCTGATA
CTGTACAAGGGAACATTACTTTACGTCTGAAAGATGTTCCTTGGGATCAAGCTTTAGATATTGTGCTTAAAACAAAGAAT
TTAGACAAACGCCGAAATGGCAATGTAATCTGGATTGCACCAGTTTCTGAGTTAATTAAGTCAGAAGAAGAGGAAGCAAA
AGCAATTGCACAAAGTGTAAAACTAGCTCCATTACAAACTGAATATATTCGTTTAAGTTATGCGAAAGCTACTGATCTTG
AGAAATTAATTACCCAAGGTAAAAATAAGACTAATAATTCAGGTGGAAATACGATAACTCAAAATGCTTCGCCTAATGAT
CCTTTAGGTGATAGTGTTGGGAGTTTATTGAGTCCTCGTGGTACGATTTCTACAGACCCTCGCACGAATACACTGATTAT
TAATGACACGTCACAAAAAATTGATCAAATTCGTAAAATGGTCGATTTGCTGGATGTATCAGTTAAGCAGGTAATGATTG
AGGCACGTATTGTCAGTGCAAGTACTGACTTTACCAAAGAGATGGGGGTGAAGTGGGGCGTGCTTTCTCAGGGTATTACC
AATAATAGTAATTTGTTGGTGGGCGGTAGCGATACCACTTTGTGGAACCTGCGTGAACCAGAAAAAGATTCCGAAACAGG
TGGTTATAAATATACGATTGAACGCCCTGATAACCTGAATGTTGATTTGGGTGCAACAGCAGTAGGTGCGAGTCGTATTG
CTTTTGGTTTAATTAGTCTGTCTGATTTTATGCTGGATTTAGAACTGTCTGCGGTTCAGGCGGATGGTTATGGCGAAGTG
ATTTCAACGCCTAAAGTTATGACTGCGGATAAACAAACTGCAAAAATTGAGTCAGGTTCTCAAGTTCCTTTTTCATCCTC
AACGGGTACTGGGGCAAATGCTACGCCGAAAATCGAATTTAAAGATGTGGTATTAAGTTTAGATGTAACGCCGAGTATTA
CACCAGATGGAAAGGTTCAAATGAATCTTGATATTAAGAAAGATAGTATTGCTGGTGTAACCCCTCAAGGACAATTCTAT
TTTAATAAAAACATGGTGAATACTAATGTCTTGGTTAATAATGGTGAAACGGTGGTATTGGGCGGTATTTTTGAACAAGA
AAATCTAAACAAACAAACTAAAGTACCATTCTTGGGAGATTTACCCTATGTTGGGAAATTATTCCGTCGTGATTCAAAAA
CTGAAAATAAACGCGAACTACTTATTTTTGTGACCCCGAGAATTGTTAATGACACTTTGACGAGAAATCATTAA

Domains

Predicted by InterproScan.

Secretin and TonB N terminus short domain (STN)

(289-334)

Bacterial type II/III secretion system short domain (Secretin_N)

(361-450)

Bacterial type II and III secretion system protein (Secretin)

(551-709)

AMIN domain (AMIN)

(37-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

75.967

100

0.767
  pilQ Acinetobacter baumannii strain A118

75.829

100

0.766
  comQ Acinetobacter baylyi ADP1

73.435

100

0.736
  pilQ Pseudomonas aeruginosa PAK

39.544

100

0.411
  pilQ Legionella pneumophila strain ERS1305867

37.255

99.582

0.371
  pilQ Legionella pneumophila strain Lp02

37.255

99.582

0.371

Multiple sequence alignment