Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   ABLB98_RS12410 Genome accession   NZ_CP157435
Coordinates   2587790..2588476 (+) Length   228 a.a.
NCBI ID   WP_348882346.1    Uniprot ID   A0AB39KHM6
Organism   Acinetobacter sp. XH1639     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2582790..2593476
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABLB98_RS12395 (ABLB98_12390) - 2583809..2584789 (-) 981 WP_348882343.1 putative solute-binding protein -
  ABLB98_RS12400 (ABLB98_12395) - 2584915..2585733 (-) 819 WP_348882344.1 NAD-dependent epimerase/dehydratase family protein -
  ABLB98_RS12405 (ABLB98_12400) recG 2585752..2587797 (+) 2046 WP_348882345.1 ATP-dependent DNA helicase RecG -
  ABLB98_RS12410 (ABLB98_12405) comF 2587790..2588476 (+) 687 WP_348882346.1 phosphoribosyltransferase family protein Machinery gene
  ABLB98_RS12415 (ABLB98_12410) - 2588427..2588822 (-) 396 WP_348882347.1 NUDIX domain-containing protein -
  ABLB98_RS12420 (ABLB98_12415) - 2589167..2590180 (+) 1014 WP_087536049.1 CorA family divalent cation transporter -
  ABLB98_RS12425 (ABLB98_12420) - 2590223..2590510 (-) 288 WP_087544113.1 lipid asymmetry maintenance protein MlaB -
  ABLB98_RS12430 (ABLB98_12425) - 2590522..2591154 (-) 633 WP_005156334.1 phospholipid-binding protein MlaC -
  ABLB98_RS12435 (ABLB98_12430) - 2591174..2591851 (-) 678 WP_087544117.1 outer membrane lipid asymmetry maintenance protein MlaD -
  ABLB98_RS12440 (ABLB98_12435) mlaE 2591851..2592630 (-) 780 WP_348882348.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  ABLB98_RS12445 (ABLB98_12440) - 2592627..2593445 (-) 819 WP_005156344.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 26306.56 Da        Isoelectric Point: 9.2301

>NTDB_id=1006852 ABLB98_RS12410 WP_348882346.1 2587790..2588476(+) (comF) [Acinetobacter sp. XH1639]
MFKLIQTSAKQIFDYLTPCSLCDIGIRKQYGVCQSCWNQLPWLKQSIQRNQQQIFVVCHYQYPIDRIIQQFKYEQKLHHQ
RLLEGLLQQLKLPKVHAIVPMPISTDRLVERGFNQTLLLAQALSKSLNIPIWQPVQRLDQHSQKGLSRIERLENIEQQFV
AAPPNHLRYRKVLIVDDVVTTGSSITALSQVLQQLGCQQVYSICLAAPIRNNASSLNFADTMESPRVE

Nucleotide


Download         Length: 687 bp        

>NTDB_id=1006852 ABLB98_RS12410 WP_348882346.1 2587790..2588476(+) (comF) [Acinetobacter sp. XH1639]
ATGTTTAAATTAATTCAAACATCAGCAAAACAAATCTTTGATTATCTAACGCCATGTAGCCTGTGTGATATTGGGATCAG
GAAGCAATACGGAGTATGTCAAAGTTGTTGGAATCAGCTACCTTGGTTAAAACAATCCATTCAACGTAATCAGCAACAAA
TATTCGTTGTATGCCATTATCAATATCCGATTGATCGCATCATTCAGCAATTTAAATATGAACAAAAACTGCATCATCAA
CGACTACTTGAAGGTCTGCTACAACAACTCAAGCTTCCTAAAGTTCATGCCATCGTTCCAATGCCGATTTCAACTGATCG
ATTAGTTGAACGAGGTTTCAACCAAACGCTGTTACTGGCGCAAGCACTTAGTAAAAGCTTAAATATCCCTATCTGGCAAC
CTGTACAACGCTTGGATCAACACTCGCAAAAAGGCTTATCGCGCATCGAAAGACTAGAAAATATTGAACAGCAATTTGTG
GCTGCGCCGCCTAATCATCTTCGTTATCGCAAAGTCTTGATCGTCGATGATGTCGTCACAACGGGCAGTTCAATTACCGC
CTTATCTCAAGTCTTGCAACAACTTGGCTGCCAACAGGTTTATAGTATTTGTTTAGCAGCCCCTATCCGTAATAATGCTA
GTTCTCTAAATTTTGCTGACACCATGGAATCACCACGTGTTGAGTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(155-211)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

67.15

90.789

0.61
  comF Acinetobacter baumannii D1279779

66.667

90.789

0.605

Multiple sequence alignment