Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ABLB98_RS01040 Genome accession   NZ_CP157435
Coordinates   216743..218221 (-) Length   492 a.a.
NCBI ID   WP_348883364.1    Uniprot ID   A0AB39KIW4
Organism   Acinetobacter sp. XH1639     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 211743..223221
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABLB98_RS01015 (ABLB98_01015) - 212037..213362 (-) 1326 WP_348883370.1 OprD family outer membrane porin -
  ABLB98_RS01020 (ABLB98_01020) - 214088..214858 (+) 771 WP_348883369.1 TorF family putative porin -
  ABLB98_RS01025 (ABLB98_01025) - 215190..215978 (+) 789 WP_348883367.1 TorF family putative porin -
  ABLB98_RS01030 (ABLB98_01030) - 216036..216176 (-) 141 WP_348883366.1 hypothetical protein -
  ABLB98_RS01035 (ABLB98_01035) - 216356..216553 (-) 198 WP_348883365.1 hypothetical protein -
  ABLB98_RS01040 (ABLB98_01040) comM 216743..218221 (-) 1479 WP_348883364.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ABLB98_RS01045 (ABLB98_01045) - 218290..218517 (-) 228 WP_087536529.1 accessory factor UbiK family protein -
  ABLB98_RS01050 (ABLB98_01050) glnK 218793..219131 (+) 339 WP_000780326.1 P-II family nitrogen regulator -
  ABLB98_RS01055 (ABLB98_01055) - 219199..220611 (+) 1413 WP_178883057.1 ammonium transporter -
  ABLB98_RS01060 (ABLB98_01060) nrdR 220738..221202 (+) 465 WP_087536531.1 transcriptional regulator NrdR -
  ABLB98_RS01065 (ABLB98_01065) ribD 221215..222315 (+) 1101 WP_249570662.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -

Sequence

Protein


Download         Length: 492 a.a.        Molecular weight: 54114.04 Da        Isoelectric Point: 7.1941

>NTDB_id=1006827 ABLB98_RS01040 WP_348883364.1 216743..218221(-) (comM) [Acinetobacter sp. XH1639]
MSFAKIYTRGLLGLHAPQIEVEVHISSGLPSLTIVGLAEAAVRESKDRVRSAIINSGFLFPTKRLTINLAPADLPKDGSR
LDLPIALGILIASGQLPENCTDGFEFIGELALDGHLRPVTGILPIAMACQQAQHRLLVPTNNLEEANQFPQFEVYAANHL
QDVCAHFLGTSHLSASPKHENLTITQYQFDLADVKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLPSILPPLNA
QENLEVASIYSVANAQHTFGQRPFRAPHHTASAIALVGGGSQPKPGEITLAHLGVLFLDELPEFDRKVLEVLRQPLESKE
IVISRAARQMTFPANFQFIAAMNPCPCGYAFNQDSRCQCSAENIQRYQNRISGPLLDRIDLHIDVPPLQTKELQDQSPTE
SSTIVRQRVMKAYDKQMLRQQCLNQALSPNLLEQYAQLDENSAKIIEMAQQRLNLSARAYHRVLRVARTIADLAESDIIL
TTHLTEALSYRG

Nucleotide


Download         Length: 1479 bp        

>NTDB_id=1006827 ABLB98_RS01040 WP_348883364.1 216743..218221(-) (comM) [Acinetobacter sp. XH1639]
ATGTCTTTCGCAAAAATTTACACGAGGGGTTTATTAGGTTTACATGCCCCTCAAATCGAAGTTGAAGTTCATATCAGTTC
AGGACTCCCCTCCTTAACCATTGTAGGTTTAGCAGAAGCCGCTGTAAGGGAAAGTAAAGATCGTGTTCGATCAGCAATTA
TCAACAGTGGTTTCTTGTTTCCAACCAAACGTTTAACGATTAATTTAGCACCTGCAGATCTTCCTAAAGATGGCTCCCGC
CTAGATTTACCGATCGCACTAGGAATTTTAATTGCTTCAGGTCAACTTCCTGAAAATTGTACTGACGGCTTTGAATTTAT
TGGTGAACTTGCATTAGATGGACATTTACGCCCTGTTACTGGAATATTGCCAATTGCGATGGCTTGCCAACAAGCCCAAC
ACCGCTTATTGGTACCTACTAATAATCTAGAAGAAGCCAATCAATTTCCGCAGTTTGAAGTTTATGCTGCCAATCATTTA
CAAGATGTATGTGCACACTTTTTGGGCACTTCTCATTTATCAGCATCACCCAAACATGAAAATTTAACCATTACTCAGTA
TCAATTTGATCTTGCAGATGTCAAAGGTCAATTACGTCCCCGTCGTGCACTAGAAATAGCAGCAGCGGGTGGACATTCTT
TACTTTTCAAAGGTCCACCTGGTACAGGTAAAACATTATTGGCTTCTCGGCTACCTTCTATTTTGCCACCACTCAATGCC
CAAGAAAATTTAGAAGTCGCAAGTATTTATTCGGTTGCAAATGCTCAACATACTTTTGGACAACGCCCCTTCCGTGCACC
ACACCATACTGCGTCAGCGATTGCATTAGTTGGAGGCGGTTCACAACCTAAACCAGGCGAAATTACACTTGCACACTTAG
GTGTATTATTTTTAGATGAATTACCTGAATTTGACCGCAAAGTTTTGGAGGTTCTCAGACAACCGCTAGAGTCGAAAGAG
ATCGTCATCTCCCGTGCGGCAAGACAAATGACATTTCCAGCGAATTTTCAATTTATTGCAGCAATGAATCCATGTCCTTG
TGGTTACGCATTTAACCAAGATAGCCGCTGCCAGTGCTCAGCAGAAAATATTCAGCGCTATCAAAACCGTATCTCAGGTC
CATTACTAGATCGTATTGATTTACATATTGATGTGCCACCTTTGCAGACCAAAGAACTACAAGATCAAAGTCCGACAGAA
AGTTCTACAATTGTGCGGCAACGCGTGATGAAAGCTTATGATAAACAAATGTTAAGACAGCAATGTTTGAATCAGGCACT
TTCTCCAAATTTGCTAGAACAATATGCTCAATTAGATGAAAATTCAGCCAAAATCATCGAAATGGCTCAACAGCGACTTA
ATCTCTCAGCACGCGCCTATCATCGTGTACTTCGTGTTGCACGAACTATAGCCGACTTAGCCGAAAGCGATATCATTTTA
ACAACCCATTTAACAGAAGCCTTGTCTTATCGAGGCTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

51.606

100

0.522
  comM Vibrio campbellii strain DS40M4

50.905

100

0.514
  comM Glaesserella parasuis strain SC1401

49.499

100

0.502
  comM Haemophilus influenzae Rd KW20

49.299

100

0.5
  comM Legionella pneumophila strain ERS1305867

49.194

100

0.496
  comM Legionella pneumophila str. Paris

49.194

100

0.496
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.833

100

0.47

Multiple sequence alignment