Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   ABLC00_RS17045 Genome accession   NZ_CP157432
Coordinates   3641748..3642488 (-) Length   246 a.a.
NCBI ID   WP_006582541.1    Uniprot ID   -
Organism   Acinetobacter nosocomialis strain XH1679     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3636748..3647488
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABLC00_RS17025 (ABLC00_17025) aroB 3637290..3638372 (-) 1083 WP_006582545.1 3-dehydroquinate synthase -
  ABLC00_RS17030 (ABLC00_17030) aroK 3638401..3638970 (-) 570 WP_006582544.1 shikimate kinase AroK -
  ABLC00_RS17035 (ABLC00_17035) pilQ 3638982..3641147 (-) 2166 WP_004711661.1 type IV pilus secretin PilQ family protein Machinery gene
  ABLC00_RS17040 (ABLC00_17040) pilP 3641210..3641737 (-) 528 WP_006582542.1 pilus assembly protein PilP Machinery gene
  ABLC00_RS17045 (ABLC00_17045) pilO 3641748..3642488 (-) 741 WP_006582541.1 type 4a pilus biogenesis protein PilO Machinery gene
  ABLC00_RS17050 (ABLC00_17050) pilN 3642485..3643129 (-) 645 WP_006581060.1 PilN domain-containing protein Machinery gene
  ABLC00_RS17055 (ABLC00_17055) comM 3643129..3644187 (-) 1059 WP_004711654.1 pilus assembly protein PilM Machinery gene
  ABLC00_RS17060 (ABLC00_17060) ponA 3644350..3646908 (+) 2559 WP_006582540.1 penicillin-binding protein PBP1a -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27595.33 Da        Isoelectric Point: 4.9673

>NTDB_id=1006819 ABLC00_RS17045 WP_006582541.1 3641748..3642488(-) (pilO) [Acinetobacter nosocomialis strain XH1679]
MSQDELQELSLEQSASKKKKFNLDKFLQQFNTLDMNNYGSWPISVKITCWTFIFFAVLALGYFVAIQPKLQAIDNAQAQE
GNLLNEFREKDSKLRNLQQYQVQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
IAIEATGDYHAFGAFVSSISALPRIVTMHDFVVEAAQAKDSKSDIPVLNYSIKAKTYRYIGAPEASAQPAKAAAATAPTS
PNAQPK

Nucleotide


Download         Length: 741 bp        

>NTDB_id=1006819 ABLC00_RS17045 WP_006582541.1 3641748..3642488(-) (pilO) [Acinetobacter nosocomialis strain XH1679]
ATGAGTCAAGATGAACTGCAAGAATTATCATTAGAGCAATCAGCTTCAAAGAAAAAGAAATTTAATCTCGATAAATTCCT
TCAGCAATTTAATACGCTTGATATGAACAACTATGGTAGTTGGCCAATATCTGTAAAAATTACTTGCTGGACTTTTATTT
TCTTTGCTGTATTGGCTTTGGGTTATTTTGTTGCTATTCAGCCAAAGCTACAAGCAATTGATAATGCCCAAGCTCAGGAA
GGTAATTTATTAAATGAATTTCGAGAAAAAGACTCGAAATTACGTAATCTTCAGCAGTATCAAGTGCAGCTTCAAGAGAT
GCAGGCAAATTTCAACCAGCAATTAGAACAATTGCCGAAAGAAACAGAGATTCCAAGTTTAGTTGAGGATATTAACTTAA
CTGGTGTGAACTCTGGATTGAAATTTAAAAATATCCGTTTAGAGGATGAAGTAAAGCAGGAAATTTTTATTGAACAACCA
ATTGCCATCGAAGCAACAGGCGACTATCACGCTTTCGGTGCTTTCGTAAGTAGTATCTCTGCTTTGCCACGTATTGTGAC
GATGCATGACTTTGTTGTAGAGGCTGCTCAAGCTAAAGATAGTAAGTCAGATATTCCTGTGCTTAATTATTCTATTAAAG
CCAAAACCTATCGATATATAGGAGCACCAGAGGCATCGGCACAACCAGCTAAGGCTGCAGCGGCGACTGCACCAACTAGC
CCTAATGCTCAGCCGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

88.618

100

0.886
  comO Acinetobacter baylyi ADP1

70.539

97.967

0.691

Multiple sequence alignment