Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   ABLC00_RS17050 Genome accession   NZ_CP157432
Coordinates   3642485..3643129 (-) Length   214 a.a.
NCBI ID   WP_006581060.1    Uniprot ID   -
Organism   Acinetobacter nosocomialis strain XH1679     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3637485..3648129
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABLC00_RS17030 (ABLC00_17030) aroK 3638401..3638970 (-) 570 WP_006582544.1 shikimate kinase AroK -
  ABLC00_RS17035 (ABLC00_17035) pilQ 3638982..3641147 (-) 2166 WP_004711661.1 type IV pilus secretin PilQ family protein Machinery gene
  ABLC00_RS17040 (ABLC00_17040) pilP 3641210..3641737 (-) 528 WP_006582542.1 pilus assembly protein PilP Machinery gene
  ABLC00_RS17045 (ABLC00_17045) pilO 3641748..3642488 (-) 741 WP_006582541.1 type 4a pilus biogenesis protein PilO Machinery gene
  ABLC00_RS17050 (ABLC00_17050) pilN 3642485..3643129 (-) 645 WP_006581060.1 PilN domain-containing protein Machinery gene
  ABLC00_RS17055 (ABLC00_17055) comM 3643129..3644187 (-) 1059 WP_004711654.1 pilus assembly protein PilM Machinery gene
  ABLC00_RS17060 (ABLC00_17060) ponA 3644350..3646908 (+) 2559 WP_006582540.1 penicillin-binding protein PBP1a -
  ABLC00_RS17065 (ABLC00_17065) - 3646926..3647750 (-) 825 WP_006582539.1 putative RNA methyltransferase -
  ABLC00_RS17070 (ABLC00_17070) - 3647753..3648085 (-) 333 WP_002051722.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24226.61 Da        Isoelectric Point: 6.0119

>NTDB_id=1006820 ABLC00_RS17050 WP_006581060.1 3642485..3643129(-) (pilN) [Acinetobacter nosocomialis strain XH1679]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLIKSTNQNLDQQLKALNGLQEQRDA
IIERMKLIQNLQSQRPVVVRLVDELVRVTPPAMYLTKFSRVGDKFTIEGKAESPNTVAELLRNLESSPWYRNAFMNSFLA
NEDKKDKTASSLLPRVEDNYGSFVVTVDLGEMGVTTTNNDADKPAVAKDTGAAK

Nucleotide


Download         Length: 645 bp        

>NTDB_id=1006820 ABLC00_RS17050 WP_006581060.1 3642485..3643129(-) (pilN) [Acinetobacter nosocomialis strain XH1679]
ATGGCAACAATTAACTTACTACCTTGGCGTGAAGAGCTGAGGGAACAACGAAAAAAACAATTTATAACTTTATGCTTTGG
GGTGGTTGTTTTGGGGATTACAACCGTATTTGGTGGATGGTTCTATTTTGATCATAAATTAGATGATCAAGAACAAGCAA
ACCAACTTATTAAAAGTACAAATCAAAACCTTGATCAGCAATTAAAAGCATTAAACGGTTTACAAGAGCAGCGTGATGCC
ATTATTGAGCGTATGAAGTTGATTCAAAATTTGCAGAGTCAACGGCCAGTAGTGGTGCGATTAGTTGATGAGCTCGTTCG
AGTCACGCCACCAGCAATGTATCTAACCAAATTCAGTCGAGTGGGGGATAAATTTACGATCGAGGGTAAAGCTGAGAGTC
CAAATACGGTAGCTGAATTGCTTCGTAACCTTGAATCGTCTCCTTGGTATCGTAATGCTTTTATGAATTCTTTCTTGGCT
AATGAAGATAAAAAAGATAAGACTGCGAGTTCTCTTCTTCCTAGGGTGGAAGATAACTATGGCAGTTTTGTTGTGACTGT
CGATTTGGGGGAAATGGGCGTGACCACAACGAATAACGATGCTGATAAGCCAGCCGTAGCAAAAGACACGGGGGCAGCCA
AATGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

91.121

100

0.911
  comN Acinetobacter baylyi ADP1

72.5

93.458

0.678

Multiple sequence alignment