Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ABLB96_RS03765 Genome accession   NZ_CP157428
Coordinates   775054..776541 (-) Length   495 a.a.
NCBI ID   WP_348896949.1    Uniprot ID   A0AB39K0D1
Organism   Acinetobacter sp. XH1741     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 770054..781541
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABLB96_RS03740 (ABLB96_03740) - 770305..771126 (+) 822 WP_348896944.1 TorF family putative porin -
  ABLB96_RS03745 (ABLB96_03745) - 771169..772047 (-) 879 WP_348896945.1 dihydrodipicolinate synthase family protein -
  ABLB96_RS03750 (ABLB96_03750) - 772063..772839 (-) 777 WP_348896946.1 aldolase -
  ABLB96_RS03755 (ABLB96_03755) - 772951..774384 (+) 1434 WP_348896947.1 PLP-dependent aminotransferase family protein -
  ABLB96_RS03760 (ABLB96_03760) - 774409..774954 (-) 546 WP_348896948.1 NADPH-dependent FMN reductase -
  ABLB96_RS03765 (ABLB96_03765) comM 775054..776541 (-) 1488 WP_348896949.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ABLB96_RS03770 (ABLB96_03770) - 776607..776834 (-) 228 WP_348896950.1 accessory factor UbiK family protein -
  ABLB96_RS03775 (ABLB96_03775) glnK 777113..777451 (+) 339 WP_000780326.1 P-II family nitrogen regulator -
  ABLB96_RS03780 (ABLB96_03780) - 777509..778903 (+) 1395 WP_348896951.1 ammonium transporter -
  ABLB96_RS03785 (ABLB96_03785) nrdR 779064..779522 (+) 459 WP_000543541.1 transcriptional regulator NrdR -
  ABLB96_RS03790 (ABLB96_03790) ribD 779538..780623 (+) 1086 WP_348896952.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 54580.63 Da        Isoelectric Point: 7.5662

>NTDB_id=1006756 ABLB96_RS03765 WP_348896949.1 775054..776541(-) (comM) [Acinetobacter sp. XH1741]
MSFSKIYTRGLLGLHAPLIEVEVHVSQGLPSLTIVGLAETAVKESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDGSR
LDLPIALGILIASGQLPENCTEGFEFIGELALDGHVRPISGALTLAMACQQAQHKIVLPRDNSQDISQLPHLECYPVSHL
KEVCEHFLGTHKLAHVQPDSRLNEIPYKFDLADVKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLPSILPPLSN
QETLEVASIYSISNTPHTFGQRPFRAPHHTASAIALVGGGSHPKPGEITLSHLGVLFLDELPEFDRKVLEVLRQPLESKE
IIISRAARQITYPANFQLIAAMNPCPCGYAFNQDSRCQCSPESIKRYQNRISGPLLDRIDLHIEVPPLKAQELQDPTPAE
DSTAVRKRVISAYEQQMQRQDCLNQALSPKQLEQFAVLDETSQRMIEMAQQRLNLSARAYHRVLRVARTIADLAQSEVIQ
SPHLTEALSYRGNHS

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=1006756 ABLB96_RS03765 WP_348896949.1 775054..776541(-) (comM) [Acinetobacter sp. XH1741]
ATGTCTTTTTCTAAAATTTATACTCGGGGACTTTTAGGTTTACATGCGCCTCTCATAGAAGTAGAGGTGCATGTGAGTCA
AGGCTTACCCTCTCTGACCATTGTAGGGCTAGCTGAAACAGCTGTAAAAGAAAGTAAAGACAGGGTTCGCTCTGCCATTA
TTAATAGTGGATTTCAGTTTCCGACGAAGCGGCTGACCATCAATCTTGCACCCGCAGATTTGCCCAAAGATGGTTCACGT
CTTGATTTACCCATTGCTCTGGGAATATTAATTGCCTCAGGTCAACTTCCAGAAAACTGTACAGAAGGTTTTGAATTTAT
TGGGGAGTTAGCACTTGATGGACACGTAAGGCCTATTTCAGGTGCATTAACTTTAGCAATGGCCTGTCAGCAAGCTCAGC
ATAAAATCGTTTTACCACGTGATAATAGTCAGGATATTAGCCAGTTACCACATCTTGAGTGTTATCCGGTGAGTCATTTA
AAGGAAGTTTGCGAGCACTTTTTAGGTACACATAAGCTCGCTCATGTACAACCAGATTCCCGTTTAAATGAAATACCTTA
TAAATTTGACCTTGCAGATGTTAAAGGTCAGCTACGCCCGCGTCGCGCACTAGAAATAGCTGCCGCTGGAGGGCATTCCC
TGCTCTTTAAAGGACCACCGGGTACAGGTAAGACTTTACTCGCTTCACGTCTTCCTTCAATTTTACCACCTCTTTCTAAT
CAAGAAACTCTTGAAGTTGCTAGTATTTATTCTATTTCAAATACGCCACATACTTTCGGACAGCGTCCATTTCGTGCGCC
TCATCATACAGCATCAGCAATTGCACTCGTTGGGGGCGGTTCTCATCCTAAACCGGGTGAAATTACCTTATCTCACTTAG
GTGTACTGTTTTTAGATGAACTGCCAGAGTTTGATCGCAAAGTATTAGAAGTTTTACGCCAGCCGCTTGAGTCAAAAGAA
ATCATTATTTCTCGTGCAGCACGGCAAATTACCTATCCTGCCAACTTCCAACTTATTGCTGCAATGAACCCCTGTCCATG
TGGTTATGCGTTTAATCAAGACAGCCGTTGTCAGTGTTCACCAGAGAGTATTAAGCGCTACCAAAACCGTATATCGGGGC
CATTACTTGACCGTATCGATTTACATATTGAAGTACCTCCTTTAAAAGCTCAGGAACTACAAGACCCAACCCCAGCAGAA
GATTCTACGGCTGTACGAAAGCGCGTGATTTCTGCTTATGAACAGCAAATGCAAAGACAAGATTGTTTAAATCAAGCCCT
TTCACCGAAACAATTAGAACAATTTGCGGTTCTAGATGAGACGTCACAGCGAATGATCGAAATGGCTCAGCAACGTTTAA
ATCTATCTGCTCGTGCTTATCACCGTGTTTTACGAGTAGCACGGACTATTGCCGATTTAGCTCAAAGTGAGGTCATTCAA
AGTCCTCACCTTACAGAAGCTCTCTCCTATCGAGGTAATCATTCTTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

51.21

100

0.513
  comM Glaesserella parasuis strain SC1401

50.501

100

0.509
  comM Legionella pneumophila str. Paris

49.8

100

0.503
  comM Legionella pneumophila strain ERS1305867

49.8

100

0.503
  comM Haemophilus influenzae Rd KW20

49.499

100

0.499
  comM Vibrio campbellii strain DS40M4

49.495

100

0.495
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.61

100

0.483

Multiple sequence alignment