Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   GPW48_RS02580 Genome accession   NZ_LR738720
Coordinates   490088..490771 (+) Length   227 a.a.
NCBI ID   WP_024405741.1    Uniprot ID   -
Organism   Streptococcus suis isolate GD-0001     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 485088..495771
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPW48_RS02560 - 485630..486691 (+) 1062 WP_024405481.1 bifunctional transcriptional activator/DNA repair enzyme AdaA -
  GPW48_RS02565 - 486701..487462 (+) 762 WP_024405482.1 nuclear transport factor 2 family protein -
  GPW48_RS02570 - 487610..488734 (+) 1125 WP_024405743.1 aminotransferase -
  GPW48_RS02575 - 488749..489918 (-) 1170 WP_074389144.1 DUF2974 domain-containing protein -
  GPW48_RS02580 braR 490088..490771 (+) 684 WP_024405741.1 response regulator transcription factor Regulator
  GPW48_RS02585 - 490764..491756 (+) 993 WP_024405740.1 sensor histidine kinase -
  GPW48_RS02590 - 491852..492610 (+) 759 WP_074390160.1 ABC transporter ATP-binding protein -
  GPW48_RS02595 - 492612..494624 (+) 2013 WP_074390159.1 ABC transporter permease -
  GPW48_RS02600 tnpA 494790..495263 (+) 474 WP_024378560.1 IS200/IS605 family transposase -
  GPW48_RS02605 - 495580..495744 (+) 165 WP_024405641.1 hypothetical protein -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 26626.99 Da        Isoelectric Point: 4.6947

>NTDB_id=1006754 GPW48_RS02580 WP_024405741.1 490088..490771(+) (braR) [Streptococcus suis isolate GD-0001]
MQKILLIEDDKTISQLVAKNLINWGYQVQEVKDFQMVLEQMEEFQPHLILLDIGLPFFNGYYWCQEIRKISRVPIMFLSS
HDQPMDIVMAINMGADDYVTKPFEMTVLLAKIQGLLRRTYDFVGEQSLLWFEEISLDLKTMQVSYGQVVEELTRNEFQIL
RVLFEHGKEVVSREELMRELWNSDIFVDDNTLSVNIARLRKKLAELGLKDVIMTKKGVGYGLVWTHE

Nucleotide


Download         Length: 684 bp        

>NTDB_id=1006754 GPW48_RS02580 WP_024405741.1 490088..490771(+) (braR) [Streptococcus suis isolate GD-0001]
ATGCAGAAAATTCTTCTTATCGAGGATGATAAAACGATTAGCCAACTAGTTGCTAAAAACTTGATAAACTGGGGTTACCA
GGTGCAAGAGGTCAAGGATTTTCAGATGGTTTTGGAACAGATGGAAGAGTTTCAGCCCCATTTGATTTTACTGGATATTG
GCCTGCCTTTTTTCAATGGCTATTACTGGTGTCAGGAAATTCGCAAGATATCCCGTGTGCCCATTATGTTTCTGTCTTCC
CATGACCAGCCAATGGATATTGTTATGGCGATCAATATGGGGGCGGATGACTATGTGACCAAGCCCTTTGAAATGACGGT
TCTCCTGGCCAAAATACAGGGCCTTCTCAGAAGAACCTATGACTTTGTCGGAGAACAAAGTTTACTCTGGTTTGAGGAGA
TTTCCCTAGACCTAAAGACCATGCAGGTGTCCTATGGACAGGTTGTGGAAGAGCTGACGCGAAATGAATTTCAGATTTTA
CGCGTTTTATTTGAACATGGCAAGGAAGTGGTCAGCCGCGAAGAGTTGATGAGAGAACTCTGGAACAGTGATATTTTTGT
GGATGACAATACTTTGTCGGTTAACATCGCTCGCCTGCGTAAAAAGTTGGCAGAACTGGGTCTGAAAGATGTGATTATGA
CCAAGAAAGGAGTCGGCTACGGCCTGGTGTGGACACATGAATAA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(151-221)

Response regulator receiver domain (Response_reg)

(4-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

47.706

96.035

0.458
  vicR Streptococcus mutans UA159

38.696

100

0.392
  micA Streptococcus pneumoniae Cp1015

37.118

100

0.374

Multiple sequence alignment