Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   ABLB96_RS03565 Genome accession   NZ_CP157428
Coordinates   732032..733186 (-) Length   384 a.a.
NCBI ID   WP_348896847.1    Uniprot ID   A0AB39K5Q7
Organism   Acinetobacter sp. XH1741     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 727032..738186
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABLB96_RS03545 (ABLB96_03545) - 728186..728839 (+) 654 WP_348896850.1 TetR/AcrR family transcriptional regulator -
  ABLB96_RS03550 (ABLB96_03550) - 728945..729865 (+) 921 WP_348896849.1 DMT family transporter -
  ABLB96_RS03555 (ABLB96_03555) - 730256..730825 (-) 570 WP_348896848.1 Sua5/YciO/YrdC/YwlC family protein -
  ABLB96_RS03560 (ABLB96_03560) dprA 730876..732012 (-) 1137 WP_348896917.1 DNA-processing protein DprA Machinery gene
  ABLB96_RS03565 (ABLB96_03565) tsaP 732032..733186 (-) 1155 WP_348896847.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  ABLB96_RS03570 (ABLB96_03570) def 733309..733839 (+) 531 WP_004705924.1 peptide deformylase -
  ABLB96_RS03575 (ABLB96_03575) - 733876..734304 (+) 429 WP_348896846.1 DUF2946 family protein -
  ABLB96_RS03580 (ABLB96_03580) - 734378..736492 (+) 2115 WP_348896845.1 TonB-dependent copper receptor -
  ABLB96_RS03585 (ABLB96_03585) - 736547..736753 (+) 207 WP_348896844.1 hypothetical protein -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 42393.45 Da        Isoelectric Point: 8.5797

>NTDB_id=1006755 ABLB96_RS03565 WP_348896847.1 732032..733186(-) (tsaP) [Acinetobacter sp. XH1741]
MKKVFDGMVQFHALGIKKHLLALALCTGVAFGTVAEVHAASPNHNPPSLKSNAPNVYIVKRGDTLWDISGHFLNKPWRWP
EIWASNQHVKNPHWIYPGDRLLLCSLDGRPLVGKDEGDGCVGIIRRYTGQTTNLQPQVRVEALNNSVPVIPLEHIKQWLE
NSTILPADAITNTPYIVGTADQRVLAAKGQMIYARGKGLVDGQRYAVYREGEPYYFTDSKGKKHSLGIELLQVASGIAVS
SEKDITNLELTDSYNAEVRRGDRVMPEEQATLPTLFYPVDAKQVLDGGKIIRVMGSIGRAAKNSVVTLDRGTAQGVQVGQ
VFDINQQGETIRDPKTKEAIQLPGQQIGSLMVFRTFDQLSYAYVLESDLPIKIGSSIQPPRFND

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=1006755 ABLB96_RS03565 WP_348896847.1 732032..733186(-) (tsaP) [Acinetobacter sp. XH1741]
ATGAAAAAGGTTTTTGACGGCATGGTTCAATTTCATGCTTTGGGGATAAAGAAGCATTTACTTGCTTTAGCACTCTGTAC
AGGGGTTGCATTTGGTACAGTAGCAGAGGTTCATGCTGCCAGCCCAAACCATAATCCTCCTTCACTTAAAAGCAATGCAC
CGAATGTGTACATTGTAAAACGTGGGGATACCCTATGGGATATTTCAGGACATTTTCTAAATAAACCATGGCGTTGGCCT
GAAATCTGGGCAAGCAATCAACATGTAAAAAATCCGCACTGGATCTATCCAGGTGACCGATTACTGTTATGTAGCTTAGA
TGGACGCCCGTTAGTCGGTAAAGATGAGGGAGATGGCTGTGTAGGGATTATCCGTCGTTACACGGGTCAAACCACAAACT
TGCAACCACAAGTTCGCGTCGAAGCATTAAATAATAGTGTGCCAGTTATTCCACTTGAACATATTAAACAGTGGTTAGAA
AACAGTACTATTTTACCAGCCGACGCAATTACTAATACGCCTTATATTGTTGGTACAGCTGATCAACGTGTACTTGCTGC
AAAAGGTCAGATGATCTATGCACGAGGAAAAGGCTTGGTTGATGGTCAACGTTATGCAGTTTATCGTGAAGGTGAACCTT
ACTATTTCACAGATAGCAAAGGTAAAAAGCATAGCTTAGGTATTGAGTTATTACAGGTTGCCTCAGGTATTGCAGTCTCT
TCTGAAAAAGACATCACGAATCTAGAACTTACAGATAGTTATAACGCTGAAGTACGTCGCGGTGATCGTGTTATGCCTGA
AGAACAAGCAACATTACCTACATTATTTTATCCAGTAGATGCCAAACAAGTGCTAGATGGCGGCAAAATTATCCGTGTAA
TGGGTTCAATTGGCAGAGCTGCAAAAAATAGTGTTGTGACTTTAGACCGTGGTACAGCACAAGGTGTTCAGGTAGGTCAA
GTTTTTGACATTAACCAACAAGGTGAAACCATTCGTGACCCTAAAACAAAAGAAGCAATTCAACTACCGGGTCAACAAAT
TGGTAGTCTAATGGTTTTTAGAACTTTTGATCAGTTGAGTTATGCCTATGTTCTAGAAAGTGATTTACCTATTAAAATCG
GTTCAAGCATTCAACCACCTCGTTTTAATGATTAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(57-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

93.49

100

0.935

Multiple sequence alignment