Detailed information
Bioinformatically predicted
Overview
| Name | scnR | Type | Regulator |
| Locus tag | GPW48_RS02260 | Genome accession | NZ_LR738720 |
| Coordinates | 432916..433566 (+) | Length | 216 a.a. |
| NCBI ID | WP_023371212.1 | Uniprot ID | - |
| Organism | Streptococcus suis isolate GD-0001 | ||
| Function | regulate comX expression (predicted from homology) Competence regulation |
||
Genomic Context
Location: 427916..438566
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GPW48_RS10695 | - | 428394..429011 (+) | 618 | WP_226319107.1 | hypothetical protein | - |
| GPW48_RS02250 | - | 429004..431517 (+) | 2514 | WP_226960919.1 | serum opacification factor | - |
| GPW48_RS02255 | - | 431983..432684 (-) | 702 | WP_023371214.1 | CPBP family intramembrane glutamic endopeptidase | - |
| GPW48_RS02260 | scnR | 432916..433566 (+) | 651 | WP_023371212.1 | response regulator transcription factor | Regulator |
| GPW48_RS02265 | - | 433568..434956 (+) | 1389 | WP_023371210.1 | sensor histidine kinase | - |
| GPW48_RS02270 | - | 435398..435949 (+) | 552 | WP_023371208.1 | isoprenylcysteine carboxyl methyltransferase family protein | - |
| GPW48_RS02275 | - | 436158..437066 (-) | 909 | WP_074390044.1 | neutral zinc metallopeptidase | - |
Sequence
Protein
Download Length: 216 a.a. Molecular weight: 24742.85 Da Isoelectric Point: 4.7792
>NTDB_id=1006750 GPW48_RS02260 WP_023371212.1 432916..433566(+) (scnR) [Streptococcus suis isolate GD-0001]
MSRILVVEDDIVISQVVCEFLKEHGYQVESVFDGKVALERFQEEQFDLIVLDIMIPSMTGLEVLKEIRKTSQIPILMLTA
MGDEYTQLISFNQIISDYVVKPFSPTILVKRIENILRGKGDTDSIEIGTILIQPTSGAVYMEEEEVQLTKKEYEVLLYLA
KRRGKIVSRDNLMMGIWGYTELDSRVLDNHIKNIRKKLPSLPLKTVVGRGYQIEDT
MSRILVVEDDIVISQVVCEFLKEHGYQVESVFDGKVALERFQEEQFDLIVLDIMIPSMTGLEVLKEIRKTSQIPILMLTA
MGDEYTQLISFNQIISDYVVKPFSPTILVKRIENILRGKGDTDSIEIGTILIQPTSGAVYMEEEEVQLTKKEYEVLLYLA
KRRGKIVSRDNLMMGIWGYTELDSRVLDNHIKNIRKKLPSLPLKTVVGRGYQIEDT
Nucleotide
Download Length: 651 bp
>NTDB_id=1006750 GPW48_RS02260 WP_023371212.1 432916..433566(+) (scnR) [Streptococcus suis isolate GD-0001]
ATGTCAAGGATCTTGGTTGTCGAGGATGACATAGTTATTAGTCAAGTTGTTTGTGAGTTTTTAAAAGAACATGGTTATCA
GGTAGAATCTGTTTTTGATGGAAAGGTTGCTTTAGAAAGGTTTCAAGAAGAACAATTCGATTTAATTGTTTTAGATATCA
TGATTCCGTCTATGACAGGTTTGGAAGTACTGAAGGAAATTCGCAAAACTTCTCAGATTCCAATTTTGATGCTGACAGCC
ATGGGTGACGAATATACACAGCTTATTAGTTTTAATCAGATTATAAGTGATTATGTTGTTAAACCATTTTCACCAACTAT
ATTGGTAAAACGGATTGAGAATATTTTGAGAGGAAAAGGAGATACAGATAGCATTGAGATAGGAACAATTCTTATTCAAC
CAACTAGCGGGGCAGTTTATATGGAAGAAGAAGAAGTTCAATTGACAAAAAAAGAATATGAAGTTTTACTATATTTAGCT
AAACGACGTGGGAAAATTGTTAGTCGTGATAACTTGATGATGGGAATATGGGGATATACGGAATTGGATAGTCGTGTCTT
AGATAATCATATCAAGAATATACGTAAAAAATTGCCGTCACTTCCTTTGAAGACAGTAGTTGGTCGCGGTTATCAAATAG
AGGATACTTGA
ATGTCAAGGATCTTGGTTGTCGAGGATGACATAGTTATTAGTCAAGTTGTTTGTGAGTTTTTAAAAGAACATGGTTATCA
GGTAGAATCTGTTTTTGATGGAAAGGTTGCTTTAGAAAGGTTTCAAGAAGAACAATTCGATTTAATTGTTTTAGATATCA
TGATTCCGTCTATGACAGGTTTGGAAGTACTGAAGGAAATTCGCAAAACTTCTCAGATTCCAATTTTGATGCTGACAGCC
ATGGGTGACGAATATACACAGCTTATTAGTTTTAATCAGATTATAAGTGATTATGTTGTTAAACCATTTTCACCAACTAT
ATTGGTAAAACGGATTGAGAATATTTTGAGAGGAAAAGGAGATACAGATAGCATTGAGATAGGAACAATTCTTATTCAAC
CAACTAGCGGGGCAGTTTATATGGAAGAAGAAGAAGTTCAATTGACAAAAAAAGAATATGAAGTTTTACTATATTTAGCT
AAACGACGTGGGAAAATTGTTAGTCGTGATAACTTGATGATGGGAATATGGGGATATACGGAATTGGATAGTCGTGTCTT
AGATAATCATATCAAGAATATACGTAAAAAATTGCCGTCACTTCCTTTGAAGACAGTAGTTGGTCGCGGTTATCAAATAG
AGGATACTTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| scnR | Streptococcus mutans UA159 |
37.838 |
100 |
0.389 |
| micA | Streptococcus pneumoniae Cp1015 |
36.889 |
100 |
0.384 |
| vicR | Streptococcus mutans UA159 |
36.283 |
100 |
0.38 |