Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   ABLB96_RS01100 Genome accession   NZ_CP157428
Coordinates   207025..209151 (-) Length   708 a.a.
NCBI ID   WP_348895803.1    Uniprot ID   A0AB39K509
Organism   Acinetobacter sp. XH1741     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 202025..214151
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABLB96_RS01085 (ABLB96_01085) - 204442..205317 (-) 876 WP_348895800.1 hypothetical protein -
  ABLB96_RS01090 (ABLB96_01090) aroB 205333..206415 (-) 1083 WP_348895801.1 3-dehydroquinate synthase -
  ABLB96_RS01095 (ABLB96_01095) aroK 206444..207013 (-) 570 WP_348895802.1 shikimate kinase AroK -
  ABLB96_RS01100 (ABLB96_01100) pilQ 207025..209151 (-) 2127 WP_348895803.1 type IV pilus secretin PilQ family protein Machinery gene
  ABLB96_RS01105 (ABLB96_01105) pilP 209214..209741 (-) 528 WP_348895866.1 pilus assembly protein PilP Machinery gene
  ABLB96_RS01110 (ABLB96_01110) pilO 209752..210492 (-) 741 WP_348895804.1 type 4a pilus biogenesis protein PilO Machinery gene
  ABLB96_RS01115 (ABLB96_01115) pilN 210489..211130 (-) 642 WP_348895805.1 PilN domain-containing protein Machinery gene
  ABLB96_RS01120 (ABLB96_01120) pilM 211130..212188 (-) 1059 WP_348895806.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 708 a.a.        Molecular weight: 76949.58 Da        Isoelectric Point: 7.2121

>NTDB_id=1006746 ABLB96_RS01100 WP_348895803.1 207025..209151(-) (pilQ) [Acinetobacter sp. XH1741]
MNQVFRQFSMGAVAIAIMQAASAQVSMTNIVPMQIAGQGTEIRVMFNGLPPQPQAYQLENPSRLILDFDKTQQGFKQSKI
AVTTNEASSVDITSDDQRSRLTVNLKDAGAFTTRVEGNTFILKINSVQTSNKPIPVAQVQPQGVSNIGFQRGSQGEGLVV
VDLLGSNTPVDVQQQGSKVVIKTLGTKIPTHLARRLNVNDFATPVSSVDAYNDKGTGVITIQSSGSYEYMAYQAENKLTI
SLKRPQDKNVTSLYKTPNYSGNKLSLDFQDIEVRRVLQLLADFTGINMVAADSVQGNITLRLKDVPWDQALDIILKTKNL
DKRRNGNVIWIAPVAELIKAEDDQAKALAQTIKLAPIQTDYIRMSYAKAVDVLKLIEDSRDAKGAAANRTTNSDALALES
LLSSRGSAVADTRTNTLIVNDTAQNIDKVRKMIELLDVQVKQVMVEARIVRASTSFTKELGVKWGILSQGITNNKNLLVG
GSETTLWNLRDPKKDETTGGYKYTIERPDNLNVDLGVSNPAGSIAFGLISMSDFMLDLELSALQADGYGEVISTPKVMTA
DKQTAKVATGQQVPYLMTTTSGAGSTATTSFKDALLSLDVTPSITPDGKIQMKLDISKDSVAGEAPNGELILNKNNINTN
VLVDNGETVILGGVFEQTTTNTQTKVPFFGDIPLVGRLFRKDVKSDDKQELLIFVTPRIVNDTLARNH

Nucleotide


Download         Length: 2127 bp        

>NTDB_id=1006746 ABLB96_RS01100 WP_348895803.1 207025..209151(-) (pilQ) [Acinetobacter sp. XH1741]
ATGAATCAGGTATTCCGTCAGTTTTCTATGGGGGCTGTAGCGATTGCAATTATGCAGGCTGCATCTGCACAGGTCAGCAT
GACCAATATTGTACCAATGCAAATTGCAGGTCAGGGCACAGAAATTAGAGTTATGTTTAATGGCTTGCCACCACAACCAC
AAGCTTATCAACTTGAAAATCCTTCGCGTTTAATTCTGGATTTTGATAAGACACAGCAAGGTTTTAAACAATCTAAAATT
GCTGTTACAACCAATGAAGCAAGTTCAGTTGATATCACCTCAGATGACCAGCGCTCACGTTTGACTGTAAATCTAAAGGA
TGCCGGTGCATTTACAACGCGTGTAGAAGGCAATACCTTTATTTTAAAAATCAATTCGGTTCAAACCAGTAACAAGCCTA
TACCAGTTGCTCAAGTACAGCCACAAGGCGTTTCAAATATTGGTTTTCAACGCGGTAGTCAGGGTGAGGGATTAGTTGTT
GTAGACCTTTTAGGAAGTAATACTCCTGTAGATGTTCAACAGCAAGGCAGTAAAGTTGTTATAAAAACTTTAGGCACGAA
AATTCCTACACATTTAGCGCGCCGTTTAAATGTGAATGATTTTGCGACTCCCGTTTCAAGTGTTGATGCTTATAATGATA
AAGGCACGGGTGTGATTACGATTCAGTCATCTGGTAGCTATGAATATATGGCATATCAGGCTGAAAATAAGTTAACAATC
AGTCTTAAGCGCCCACAAGATAAGAATGTAACATCTTTATATAAAACACCAAATTACTCTGGGAATAAACTTTCACTAGA
CTTTCAAGATATTGAAGTGCGCCGTGTTTTACAGTTACTTGCTGATTTTACAGGCATTAATATGGTGGCGGCTGATAGTG
TGCAGGGTAATATCACATTACGTTTAAAAGATGTACCTTGGGATCAAGCACTCGATATTATTTTAAAAACTAAGAATCTT
GATAAACGCCGTAATGGAAATGTGATCTGGATTGCTCCAGTTGCGGAGTTAATTAAAGCAGAGGATGATCAGGCAAAAGC
TTTAGCACAAACTATTAAGTTGGCACCGATCCAAACAGATTATATCCGTATGAGTTATGCGAAAGCTGTTGATGTACTTA
AGTTAATCGAAGATTCTCGTGATGCAAAAGGGGCAGCTGCAAACCGTACTACCAATTCAGATGCTCTTGCTTTAGAAAGT
TTGTTAAGCTCTCGTGGTAGCGCGGTTGCTGATACACGCACTAATACCTTGATTGTAAATGATACAGCACAAAATATTGA
TAAAGTTCGTAAAATGATTGAGTTGCTTGATGTACAAGTCAAACAGGTTATGGTTGAGGCACGTATTGTTAGAGCTTCTA
CCTCATTTACAAAAGAACTTGGGGTAAAGTGGGGTATTCTTTCGCAAGGTATTACCAATAATAAAAATTTATTGGTTGGT
GGTAGTGAAACAACCTTGTGGAACTTACGTGACCCTAAAAAAGATGAAACTACTGGGGGGTATAAGTATACGATTGAGCG
TCCAGACAACTTAAACGTAGATTTAGGCGTGTCTAATCCAGCGGGAAGTATTGCCTTTGGTCTCATTAGTATGTCTGACT
TTATGTTGGATCTAGAGCTTTCGGCTTTACAGGCTGATGGCTATGGTGAAGTTATTTCGACTCCAAAAGTGATGACTGCT
GATAAGCAAACTGCGAAAGTTGCTACGGGTCAACAAGTTCCTTATCTAATGACAACCACTTCTGGTGCTGGTTCTACAGC
AACGACATCATTTAAAGATGCGCTCTTAAGTCTTGATGTTACACCAAGCATTACACCTGATGGTAAGATTCAAATGAAAT
TAGATATTTCTAAGGACTCTGTAGCGGGTGAAGCACCGAATGGTGAATTAATTCTGAATAAGAATAATATTAATACCAAT
GTGCTAGTTGATAATGGAGAAACCGTCATTTTAGGTGGTGTATTTGAGCAAACAACGACGAACACCCAAACTAAAGTTCC
TTTCTTTGGTGATATTCCTTTAGTCGGTCGTTTATTTAGAAAAGATGTAAAGTCTGATGATAAACAAGAGTTATTGATTT
TCGTAACACCACGAATTGTTAATGACACTTTAGCGAGAAATCATTAA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(362-442)

Secretin and TonB N terminus short domain (STN)

(291-333)

AMIN domain (AMIN)

(39-121)

Bacterial type II and III secretion system protein (Secretin)

(542-700)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

88.627

100

0.903
  pilQ Acinetobacter baumannii strain A118

88.488

100

0.901
  comQ Acinetobacter baylyi ADP1

72.346

100

0.732
  pilQ Pseudomonas aeruginosa PAK

39.545

99.294

0.393

Multiple sequence alignment