Detailed information NTG0100648

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: M949_RS04250
• Genome accession: NZ_CP006649
• Coordinates: 916676..917698 (+)
• Length: 340 a.a.
• NCBI ID: WP_014937509.1
• Uniprot ID: -
• Organism: Riemerella anatipestifer CH3
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 911676..922698

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
M949_RS04220 (M949_0898)	-	912116..913264 (+)	1149	WP_014937504.1	aldo/keto reductase	-
M949_RS04225 (M949_0899)	-	913276..914040 (+)	765	WP_014937505.1	enoyl-CoA hydratase/isomerase family protein	-
M949_RS04230 (M949_0900)	-	914066..914497 (+)	432	WP_004916535.1	dCMP deaminase family protein	-
M949_RS04235 (M949_0901)	xerD	914498..915409 (+)	912	WP_014937506.1	site-specific tyrosine recombinase XerD	-
M949_RS04240 (M949_0902)	-	915414..915926 (+)	513	WP_038693532.1	NUDIX domain-containing protein	-
M949_RS04245 (M949_0903)	-	916006..916512 (+)	507	WP_014937508.1	ferritin	-
M949_RS04250 (M949_0904)	ruvB	916676..917698 (+)	1023	WP_014937509.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
M949_RS04255 (M949_0905)	-	917736..918602 (+)	867	WP_038693534.1	MBL fold metallo-hydrolase	-
M949_RS04260 (M949_0906)	coaE	918618..919208 (+)	591	WP_004916520.1	dephospho-CoA kinase	-
M949_RS04265 (M949_0907)	-	919221..920210 (+)	990	WP_038693536.1	cation diffusion facilitator family transporter	-
M949_RS04270 (M949_0908)	uvrC	920230..922020 (+)	1791	WP_181143391.1	excinuclease ABC subunit UvrC	Machinery gene

Sequence

Protein

• Length: 340 a.a.
• Molecular weight: 38059.70 Da
• Isoelectric Point: 5.0754

>NTDB_id=100648 M949_RS04250 WP_014937509.1 916676..917698(+) (ruvB) [Riemerella anatipestifer CH3]
MPDFLHPDKENYSAEELLLEEQIRPQSFKDFAGQRRTLDNLEVFVAAAKKRGSALDHTLLHGPPGLGKTTLAHIIANELG
VGFKVTSGPVLDKPGSLAGLLTNLEENDVLFIDEIHRLSPVVEEYLYSAMEDYKIDIMLETGPNARSVQINLNPFTLVGA
TTRSGMLTKPMLARFGIQSRLEYYTVELLGMIIERSARVLGVPIYEDAALEIARRSRGTPRIANALLRRVRDFAEIKGNG
EIEIKITKFALDSLNVDEFGLDDMDNKIMRVMIENFKGKPVGISALATSIGENPETLEEVYEPFLIQEGFIIRTPRGREV
TDKAYQHLNINRTKNMGELF

Nucleotide

• Length: 1023 bp

>NTDB_id=100648 M949_RS04250 WP_014937509.1 916676..917698(+) (ruvB) [Riemerella anatipestifer CH3]
ATGCCAGACTTCTTACATCCAGATAAAGAAAATTATTCAGCCGAAGAGCTTTTATTAGAAGAGCAAATACGCCCTCAATC
GTTCAAAGATTTTGCGGGACAAAGGCGTACTTTAGATAATTTAGAAGTCTTTGTAGCGGCTGCCAAAAAACGAGGTTCTG
CACTAGACCACACACTTCTGCACGGTCCTCCAGGGTTAGGAAAAACCACTCTAGCCCACATTATTGCTAATGAATTGGGG
GTGGGTTTTAAAGTAACCTCTGGTCCTGTCTTAGACAAACCTGGAAGTTTAGCTGGACTTCTTACCAATTTAGAAGAAAA
TGATGTTCTTTTCATAGACGAAATACACCGTTTATCTCCCGTAGTAGAAGAGTATCTCTATTCCGCTATGGAAGATTACA
AGATAGATATTATGCTAGAAACAGGACCTAATGCTCGTTCAGTGCAAATCAATCTTAATCCATTTACTTTAGTTGGAGCT
ACTACAAGAAGCGGTATGCTTACCAAACCAATGCTAGCTAGATTCGGGATACAATCTAGATTAGAGTACTACACAGTAGA
ACTTTTAGGTATGATTATCGAAAGAAGTGCTAGAGTGCTTGGCGTTCCTATTTATGAAGATGCTGCACTAGAGATAGCTA
GAAGAAGCCGAGGCACTCCTAGAATTGCGAATGCTCTACTTCGCCGTGTGCGAGATTTTGCAGAAATAAAAGGCAATGGT
GAGATAGAAATAAAGATAACCAAATTCGCACTAGATTCTCTCAATGTAGATGAGTTTGGGCTTGATGATATGGACAACAA
AATTATGAGAGTAATGATAGAGAACTTCAAAGGTAAACCTGTGGGAATTTCTGCATTAGCCACTTCCATCGGAGAAAATC
CAGAGACTTTGGAAGAAGTTTATGAGCCTTTTTTAATTCAAGAAGGATTCATCATCAGAACACCAAGAGGTCGAGAAGTT
ACCGATAAGGCTTACCAACACCTTAACATCAATAGAACTAAAAATATGGGAGAGCTTTTCTAA

Domains

Predicted by InterProScan.

• RuvB AAA lid domain (AAA_lid_4) (184-257)

• RuvB C-terminal winged helix domain (WHD_RuvB) (258-329)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (23-181)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Streptococcus pneumoniae TIGR4	57.143	92.647	0.529
ruvB	Streptococcus pneumoniae R6	57.143	92.647	0.529
ruvB	Streptococcus pneumoniae D39	57.143	92.647	0.529
ruvB	Bacillus subtilis subsp. subtilis str. 168	56.508	92.647	0.524
ruvB	Synechocystis sp. PCC 6803	47.447	97.941	0.465
ruvB	Helicobacter pylori 26695	47.937	92.647	0.444