Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   M949_RS04270 Genome accession   NZ_CP006649
Coordinates   920230..922020 (+) Length   596 a.a.
NCBI ID   WP_181143391.1    Uniprot ID   -
Organism   Riemerella anatipestifer CH3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 915230..927020
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M949_RS04240 (M949_0902) - 915414..915926 (+) 513 WP_038693532.1 NUDIX domain-containing protein -
  M949_RS04245 (M949_0903) - 916006..916512 (+) 507 WP_014937508.1 ferritin -
  M949_RS04250 (M949_0904) ruvB 916676..917698 (+) 1023 WP_014937509.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  M949_RS04255 (M949_0905) - 917736..918602 (+) 867 WP_038693534.1 MBL fold metallo-hydrolase -
  M949_RS04260 (M949_0906) coaE 918618..919208 (+) 591 WP_004916520.1 dephospho-CoA kinase -
  M949_RS04265 (M949_0907) - 919221..920210 (+) 990 WP_038693536.1 cation diffusion facilitator family transporter -
  M949_RS04270 (M949_0908) uvrC 920230..922020 (+) 1791 WP_181143391.1 excinuclease ABC subunit UvrC Machinery gene
  M949_RS04275 (M949_0909) - 922061..923686 (+) 1626 WP_158454208.1 T9SS type A sorting domain-containing protein -
  M949_RS04280 (M949_0910) - 923676..924089 (-) 414 WP_038693541.1 VanZ family protein -
  M949_RS04285 (M949_0911) lnt 924147..925790 (+) 1644 WP_014937516.1 apolipoprotein N-acyltransferase -
  M949_RS04290 (M949_0912) - 925825..926823 (+) 999 WP_014937517.1 aminoglycoside phosphotransferase family protein -

Sequence

Protein


Download         Length: 596 a.a.        Molecular weight: 69208.97 Da        Isoelectric Point: 9.0390

>NTDB_id=100649 M949_RS04270 WP_181143391.1 920230..922020(+) (uvrC) [Riemerella anatipestifer CH3]
MNETLELQLKTLPKEPGVYRYYDEAGQLLYVGKAKNLKNRVLSYFNKSQVGYKTKIMVKKIHRLEVTIVPSEYDALLLEN
NLIKEHQPFYNIMMKDDKSFPWLCIKNEPFPRLFLTRKRIKDGSEYYGPYAKVKPARVLLETIKNLYKIRTCTLNLSEDR
IEKANYKVCLEYHIKNCEGPCEGLESEEDYEKKINAVRGIIKGDFRLAKAYLEEEMLKHASNLEFEKAQMVKEKLEFLED
YQVKHTVVNPSIDDVDVFGMVSDETTAYINYFKIRNGNIVQSYTSEFRKKLEESDEEILEEAVVAIRDKFQSESKEILLP
FHLGTEIPQVKLIVPKVGDKKRIVELSEKNAREYRLEKLKQIQIVDPDRHTNRIMAEMKTLLRLPEEPRHIEGFDNSNIQ
GTNPVSACVVFKDGKPSKKDYRIFHIKTVEGPNDFASMEEVIYRRYKRYLDEGESLPQLILIDGGKGQLSSAVKSLKKLD
LYGKISIIGIAKRLEELFFPNDPIPLYLDKTSETLKVLQRVRDEAHRFGMKHHRTRRTNSTIKSELEEIPGVGAKSIELL
LSKLKSVKRIKEASQETLEEILGKSKGSIVWQYFNG

Nucleotide


Download         Length: 1791 bp        

>NTDB_id=100649 M949_RS04270 WP_181143391.1 920230..922020(+) (uvrC) [Riemerella anatipestifer CH3]
GTGAATGAGACTTTAGAACTTCAGCTAAAAACTTTACCAAAAGAACCTGGCGTTTACCGTTATTATGACGAAGCGGGGCA
ACTGCTCTATGTAGGGAAAGCTAAAAACCTTAAAAATAGGGTGCTATCTTACTTCAATAAAAGTCAAGTAGGTTATAAGA
CCAAAATTATGGTAAAAAAAATCCATCGTCTAGAGGTTACCATAGTTCCTAGTGAATACGACGCCCTCCTTTTAGAAAAC
AACCTCATCAAGGAACATCAGCCTTTCTACAATATTATGATGAAAGACGACAAAAGTTTCCCTTGGCTGTGCATCAAAAA
TGAACCTTTCCCTAGGCTATTTCTTACCAGAAAACGCATTAAAGATGGCTCCGAATATTATGGTCCTTACGCTAAAGTAA
AACCCGCTAGAGTACTTTTAGAAACCATTAAAAACCTCTATAAAATCAGGACTTGTACACTTAATCTTTCTGAAGATAGG
ATAGAGAAAGCCAATTATAAAGTCTGTTTAGAATACCACATTAAAAACTGCGAAGGTCCTTGCGAAGGTCTGGAAAGTGA
GGAAGATTACGAAAAGAAAATCAATGCTGTAAGAGGAATTATAAAAGGAGATTTCCGTTTGGCAAAAGCCTACTTAGAAG
AGGAGATGCTAAAACACGCCTCCAACCTAGAGTTTGAAAAAGCTCAAATGGTAAAGGAAAAATTGGAGTTTTTGGAAGAT
TATCAGGTTAAACACACTGTGGTTAATCCTAGTATAGATGATGTAGATGTATTTGGTATGGTGAGTGATGAAACGACGGC
TTACATCAATTATTTTAAAATCAGAAATGGAAATATCGTTCAAAGTTATACTTCCGAATTCAGAAAAAAACTAGAAGAAA
GCGACGAAGAAATACTAGAAGAAGCTGTAGTTGCAATTAGAGATAAATTTCAGTCTGAATCTAAGGAAATATTACTACCA
TTCCATTTAGGCACCGAAATTCCTCAAGTGAAACTCATCGTTCCAAAGGTGGGCGACAAAAAGAGAATTGTAGAACTTTC
CGAAAAAAATGCGAGAGAATATCGTCTAGAAAAACTAAAGCAAATCCAAATTGTAGACCCTGACCGCCATACCAACCGCA
TTATGGCAGAAATGAAAACACTTCTTAGGCTTCCAGAAGAGCCAAGACACATTGAAGGCTTTGATAATTCTAATATTCAG
GGGACTAACCCTGTATCTGCCTGTGTCGTCTTTAAAGACGGTAAACCAAGCAAGAAGGATTATCGTATTTTCCATATCAA
GACCGTAGAAGGTCCTAACGACTTTGCTTCTATGGAAGAAGTGATTTACCGAAGATATAAAAGATATTTAGATGAAGGCG
AGTCTCTACCTCAACTGATTTTGATAGACGGCGGTAAGGGGCAGCTAAGCTCTGCCGTTAAAAGTTTAAAAAAGTTAGAT
TTATATGGTAAAATCTCCATCATAGGTATTGCTAAAAGGTTAGAAGAGCTATTTTTCCCTAACGACCCCATTCCTTTATA
TTTAGACAAAACTTCGGAAACACTTAAAGTCTTACAAAGAGTGAGAGACGAAGCCCACCGTTTTGGAATGAAGCACCACC
GCACCAGAAGAACCAACAGCACCATAAAATCAGAATTGGAAGAAATCCCAGGCGTTGGAGCTAAATCCATAGAGCTATTG
CTAAGTAAACTAAAATCAGTAAAGCGTATTAAAGAAGCCTCACAGGAAACCTTAGAGGAAATTTTAGGTAAGTCTAAAGG
CAGTATAGTATGGCAGTATTTTAATGGATAG

Domains

Predicted by InterProScan.

GIY-YIG catalytic domain (GIY-YIG)

(16-90)

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(380-529)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Streptococcus pneumoniae R6

37.458

98.993

0.371
  uvrC Streptococcus pneumoniae D39

37.458

98.993

0.371
  uvrC Streptococcus pneumoniae TIGR4

37.288

98.993

0.369

Multiple sequence alignment