Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   ABKP85_RS12105 Genome accession   NZ_CP157379
Coordinates   2355539..2355982 (-) Length   147 a.a.
NCBI ID   WP_011836045.1    Uniprot ID   -
Organism   Lactococcus cremoris strain NZ3900     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2350539..2360982
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABKP85_RS12070 (ABKP85_12035) - 2351464..2352273 (-) 810 WP_011836038.1 metal ABC transporter permease -
  ABKP85_RS12075 (ABKP85_12040) - 2352266..2353003 (-) 738 WP_011836039.1 metal ABC transporter ATP-binding protein -
  ABKP85_RS12080 (ABKP85_12045) - 2353182..2354024 (-) 843 WP_011836040.1 metal ABC transporter solute-binding protein, Zn/Mn family -
  ABKP85_RS12085 (ABKP85_12050) - 2354021..2354458 (-) 438 WP_011836041.1 zinc-dependent MarR family transcriptional regulator -
  ABKP85_RS12090 (ABKP85_12055) comGG 2354539..2354838 (-) 300 WP_011836042.1 competence type IV pilus minor pilin ComGG Machinery gene
  ABKP85_RS12095 (ABKP85_12060) comGF 2354862..2355287 (-) 426 WP_014735174.1 competence type IV pilus minor pilin ComGF Machinery gene
  ABKP85_RS12100 (ABKP85_12065) comGE 2355271..2355567 (-) 297 WP_014735175.1 competence type IV pilus minor pilin ComGE Machinery gene
  ABKP85_RS12105 (ABKP85_12070) comGD 2355539..2355982 (-) 444 WP_011836045.1 competence type IV pilus minor pilin ComGD Machinery gene
  ABKP85_RS12110 (ABKP85_12075) comGC 2355930..2356307 (-) 378 WP_011836046.1 competence type IV pilus major pilin ComGC Machinery gene
  ABKP85_RS12115 (ABKP85_12080) comGB 2356325..2357350 (-) 1026 WP_042211510.1 competence type IV pilus assembly protein ComGB Machinery gene
  ABKP85_RS12120 (ABKP85_12085) comGA 2357250..2358230 (-) 981 WP_011836048.1 competence type IV pilus ATPase ComGA Machinery gene

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 17052.09 Da        Isoelectric Point: 8.3095

>NTDB_id=1006479 ABKP85_RS12105 WP_011836045.1 2355539..2355982(-) (comGD) [Lactococcus cremoris strain NZ3900]
MMITMTRIKMNSAISMIRAFTLLESLLVLLIVSFITLFFSAELTQTVHLFKGELFVLQFENLYKISQENAALQSSSENLE
SKNGKLIYENKEIDIPKEVEMAEFLIKFDEKGENSSLQKIKVYLPYEKKTILYQMEMGSGKYKKKIN

Nucleotide


Download         Length: 444 bp        

>NTDB_id=1006479 ABKP85_RS12105 WP_011836045.1 2355539..2355982(-) (comGD) [Lactococcus cremoris strain NZ3900]
ATGATGATTACTATGACCAGAATAAAAATGAACAGCGCAATTTCGATGATTAGAGCCTTCACATTGTTAGAATCTCTACT
GGTATTACTTATTGTCTCTTTTATCACCCTCTTTTTCTCAGCAGAATTGACTCAAACAGTGCATTTATTTAAGGGAGAAC
TCTTTGTCTTACAGTTCGAAAATTTATACAAAATAAGTCAGGAGAATGCAGCGCTACAAAGTAGTTCAGAAAATTTAGAA
AGTAAAAATGGGAAATTGATTTATGAAAACAAAGAGATAGATATTCCCAAAGAGGTTGAAATGGCAGAATTTTTGATTAA
ATTTGATGAGAAAGGGGAGAACTCAAGTTTACAGAAAATCAAAGTTTATTTACCTTATGAGAAGAAAACAATTTTATATC
AAATGGAGATGGGGAGTGGAAAATATAAAAAGAAAATCAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Lactococcus lactis subsp. cremoris KW2

97.959

100

0.98
  comYD Streptococcus gordonii str. Challis substr. CH1

35.762

100

0.367

Multiple sequence alignment