Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ABFV38_RS21365 Genome accession   NZ_CP157375
Coordinates   4530798..4532318 (+) Length   506 a.a.
NCBI ID   WP_348958016.1    Uniprot ID   -
Organism   Enterobacter cloacae complex sp. Mu1197     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4525798..4537318
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABFV38_RS21340 (ABFV38_21340) ilvE 4527365..4528294 (-) 930 WP_023309654.1 branched-chain-amino-acid transaminase -
  ABFV38_RS21345 (ABFV38_21345) ilvM 4528313..4528576 (-) 264 WP_006179206.1 acetolactate synthase 2 small subunit -
  ABFV38_RS21350 (ABFV38_21350) ilvG 4528573..4530219 (-) 1647 WP_348958014.1 acetolactate synthase 2 catalytic subunit -
  ABFV38_RS21355 (ABFV38_21355) ilvX 4530222..4530272 (-) 51 WP_166792073.1 peptide IlvX -
  ABFV38_RS21360 (ABFV38_21360) ilvL 4530359..4530457 (-) 99 WP_001311244.1 ilv operon leader peptide -
  ABFV38_RS21365 (ABFV38_21365) comM 4530798..4532318 (+) 1521 WP_348958016.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ABFV38_RS21370 (ABFV38_21370) - 4532349..4532687 (-) 339 WP_008501577.1 DUF413 domain-containing protein -
  ABFV38_RS21375 (ABFV38_21375) hdfR 4532806..4533627 (+) 822 WP_235403363.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55006.04 Da        Isoelectric Point: 7.1226

>NTDB_id=1006394 ABFV38_RS21365 WP_348958016.1 4530798..4532318(+) (comM) [Enterobacter cloacae complex sp. Mu1197]
MSLSVVYTRAALGVKAPLVSVEVHLSNGLPGLTLVGLPETTVKEARDRVRSAIINSGYTFPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLNTTRLGSYEFVGELALTGALRGVPGAISGALEAIRAGRQIIVANENASEVSLIAEKGCLIAGHL
QEVCAWLEGRHELSEPEECDEVIADVPEDLSEIMGQEQGKRALEITAAGGHNLLLIGPPGTGKTMLASRLSGLLPPLNNH
EALESAAIYSLISSASLQKQWRRRPFRSPHHSASLTAMVGGGSIPGPGEISLAHNGILFLDELPEFERRVLDALREPIES
GEIHISRTRAKISYPAQFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLGKLSGPFLDRFDLSLEIPLPPPGLLRQTGITG
ENSAKVRERVIAAQARQYTRQNRLNARLDNAGIRQFCALNSEDAVWLEETLTRFGLSIRAWQRLLKVARTIADVEGCTDI
ERKHLQEALSYRAIDRLLLHLQKLLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=1006394 ABFV38_RS21365 WP_348958016.1 4530798..4532318(+) (comM) [Enterobacter cloacae complex sp. Mu1197]
ATGTCACTGTCAGTTGTTTATACGCGTGCGGCCCTCGGGGTAAAGGCACCGCTTGTTTCCGTAGAGGTGCATTTGAGTAA
TGGGCTGCCCGGACTCACGCTTGTCGGGTTACCTGAAACGACGGTTAAAGAAGCCAGGGATCGCGTCCGTAGCGCAATAA
TAAATAGCGGTTATACCTTCCCTGCGAAGAAGATCACCATCAACCTTGCTCCCGCCGACCTGCCTAAAGAAGGGGGACGA
TACGATTTACCTATCGCAATTGCCCTTCTCGCGGCTTCTGAGCAGCTTAATACGACAAGGCTAGGCTCGTATGAGTTCGT
GGGTGAACTCGCGCTCACAGGCGCGCTGAGAGGCGTTCCCGGCGCGATATCGGGAGCGCTGGAGGCCATACGAGCAGGCC
GGCAAATCATTGTGGCCAATGAAAATGCATCAGAAGTGAGTCTTATCGCGGAAAAAGGATGCCTCATCGCGGGACATTTA
CAGGAAGTTTGTGCCTGGCTGGAAGGACGACATGAACTGTCCGAACCGGAGGAGTGTGACGAGGTTATAGCCGACGTCCC
GGAGGATCTCAGCGAGATTATGGGACAGGAGCAAGGGAAGCGGGCGCTGGAGATTACGGCCGCAGGTGGACACAATCTTC
TGTTGATTGGCCCGCCAGGTACGGGGAAAACGATGCTGGCGAGCAGGCTGAGCGGGTTACTTCCACCGCTCAATAACCAT
GAAGCGCTGGAAAGCGCCGCCATATATAGCCTCATCAGTTCTGCATCGTTGCAAAAACAGTGGCGCCGTCGTCCTTTTCG
TTCCCCACATCATAGCGCTTCACTGACGGCGATGGTCGGCGGCGGGTCTATCCCCGGCCCGGGAGAGATCTCACTGGCGC
ACAATGGCATTCTGTTTCTCGATGAGCTGCCCGAGTTTGAGCGCCGCGTGCTGGATGCGCTGAGAGAACCTATTGAATCT
GGCGAAATACATATCTCGCGCACACGGGCCAAAATAAGCTATCCCGCGCAGTTTCAACTGGTCGCTGCGATGAATCCCAG
CCCGACGGGCCACTACCAGGGCAACCATAACCGCTGTACGCCAGAGCAGACGCTACGCTATCTGGGAAAGTTATCCGGTC
CGTTCCTCGACCGTTTCGATTTATCTCTCGAAATCCCGCTTCCTCCTCCGGGCCTGCTCAGGCAGACGGGCATCACGGGT
GAAAACTCTGCGAAGGTACGCGAGCGGGTGATCGCCGCCCAGGCACGACAGTACACTCGCCAGAACAGGCTAAACGCGCG
GCTGGATAATGCCGGGATCCGGCAGTTTTGTGCCCTTAACAGTGAGGATGCAGTATGGCTGGAGGAGACGTTGACGCGCT
TTGGGCTATCTATACGTGCGTGGCAGCGTTTGCTAAAAGTGGCCAGAACCATTGCTGACGTGGAGGGATGTACTGACATT
GAGAGAAAACACTTGCAGGAGGCGCTGAGCTATCGCGCTATCGATCGTTTGCTACTGCATCTGCAGAAGTTGCTGGCATA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

58.546

100

0.589
  comM Glaesserella parasuis strain SC1401

58.58

100

0.587
  comM Vibrio campbellii strain DS40M4

58.847

99.407

0.585
  comM Vibrio cholerae strain A1552

58.367

99.209

0.579
  comM Legionella pneumophila str. Paris

50.302

98.221

0.494
  comM Legionella pneumophila strain ERS1305867

50.302

98.221

0.494
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.59

100

0.437

Multiple sequence alignment