Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | ABFV38_RS01560 | Genome accession | NZ_CP157375 |
| Coordinates | 338841..339365 (+) | Length | 174 a.a. |
| NCBI ID | WP_008503384.1 | Uniprot ID | A0A156LWB5 |
| Organism | Enterobacter cloacae complex sp. Mu1197 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 333841..344365
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABFV38_RS01540 (ABFV38_01540) | aphA | 334165..334878 (+) | 714 | WP_063622860.1 | acid phosphatase AphA | - |
| ABFV38_RS01545 (ABFV38_01545) | - | 334992..335408 (+) | 417 | WP_045909174.1 | secondary thiamine-phosphate synthase enzyme YjbQ | - |
| ABFV38_RS01550 (ABFV38_01550) | - | 335411..335764 (+) | 354 | WP_008503382.1 | MmcQ/YjbR family DNA-binding protein | - |
| ABFV38_RS01555 (ABFV38_01555) | uvrA | 335768..338590 (-) | 2823 | WP_045909175.1 | excinuclease ABC subunit UvrA | - |
| ABFV38_RS01560 (ABFV38_01560) | ssb | 338841..339365 (+) | 525 | WP_008503384.1 | single-stranded DNA-binding protein SSB1 | Machinery gene |
| ABFV38_RS01565 (ABFV38_01565) | - | 339485..340120 (+) | 636 | WP_348958266.1 | hypothetical protein | - |
| ABFV38_RS01570 (ABFV38_01570) | - | 340182..340463 (-) | 282 | WP_045261050.1 | YjcB family protein | - |
| ABFV38_RS01575 (ABFV38_01575) | - | 340955..342358 (+) | 1404 | WP_048030236.1 | sensor domain-containing diguanylate cyclase | - |
| ABFV38_RS01580 (ABFV38_01580) | - | 342698..344263 (+) | 1566 | WP_048030238.1 | EAL domain-containing protein | - |
Sequence
Protein
Download Length: 174 a.a. Molecular weight: 18593.60 Da Isoelectric Point: 5.2456
>NTDB_id=1006377 ABFV38_RS01560 WP_008503384.1 338841..339365(+) (ssb) [Enterobacter cloacae complex sp. Mu1197]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGAEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAPAP
SNEPPMDFDDDIPF
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGAEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAPAP
SNEPPMDFDDDIPF
Nucleotide
Download Length: 525 bp
>NTDB_id=1006377 ABFV38_RS01560 WP_008503384.1 338841..339365(+) (ssb) [Enterobacter cloacae complex sp. Mu1197]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAGATGAAAGAGCAGACCG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCCGAAGTGGCCGGTGAGTATCTGCGTAAAGGTTCTCAGGTCTATATC
GAAGGCCAACTGCGCACCCGCAAATGGACCGATCAGTCCGGTGCTGAGAAGTACACGACGGAAGTGGTAGTTAACGTCGG
CGGCACCATGCAGATGCTGGGTGGCCGTCAGGGCGGCGGCGCACCAGCAGGTGGCGGCCAGCAGCAGGGCGGTTGGGGTC
AGCCTCAGCAGCCGCAGGGTGGCAACCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGCAGTCTGCTCCTGCACCG
TCTAACGAACCGCCAATGGATTTCGACGACGACATTCCGTTCTGA
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAGATGAAAGAGCAGACCG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCCGAAGTGGCCGGTGAGTATCTGCGTAAAGGTTCTCAGGTCTATATC
GAAGGCCAACTGCGCACCCGCAAATGGACCGATCAGTCCGGTGCTGAGAAGTACACGACGGAAGTGGTAGTTAACGTCGG
CGGCACCATGCAGATGCTGGGTGGCCGTCAGGGCGGCGGCGCACCAGCAGGTGGCGGCCAGCAGCAGGGCGGTTGGGGTC
AGCCTCAGCAGCCGCAGGGTGGCAACCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGCAGTCTGCTCCTGCACCG
TCTAACGAACCGCCAATGGATTTCGACGACGACATTCCGTTCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
76.111 |
100 |
0.787 |
| ssb | Glaesserella parasuis strain SC1401 |
57.377 |
100 |
0.603 |
| ssb | Neisseria meningitidis MC58 |
47.191 |
100 |
0.483 |
| ssb | Neisseria gonorrhoeae MS11 |
47.191 |
100 |
0.483 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
35.556 |
100 |
0.368 |