Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ABHF33_RS08410 Genome accession   NZ_CP157355
Coordinates   1758824..1760323 (+) Length   499 a.a.
NCBI ID   WP_348946549.1    Uniprot ID   A0AAU7FEG3
Organism   Chitinibacter sp. FCG-7     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 1753824..1765323
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABHF33_RS08380 (ABHF33_08380) - 1753976..1755169 (+) 1194 WP_348946542.1 acetate/propionate family kinase -
  ABHF33_RS08385 (ABHF33_08385) - 1755342..1756121 (+) 780 WP_348946543.1 BPSS1780 family membrane protein -
  ABHF33_RS08390 (ABHF33_08390) - 1756118..1756489 (+) 372 WP_348946544.1 diacylglycerol kinase -
  ABHF33_RS08395 (ABHF33_08395) - 1756585..1756995 (-) 411 WP_348946545.1 DUF2721 domain-containing protein -
  ABHF33_RS08400 (ABHF33_08400) - 1756985..1757758 (-) 774 WP_348946546.1 LytTR family DNA-binding domain-containing protein -
  ABHF33_RS08405 (ABHF33_08405) - 1757727..1758755 (-) 1029 WP_348946547.1 histidine kinase -
  ABHF33_RS08410 (ABHF33_08410) comM 1758824..1760323 (+) 1500 WP_348946549.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ABHF33_RS08415 (ABHF33_08415) - 1760338..1762395 (-) 2058 WP_348946550.1 EAL domain-containing protein -
  ABHF33_RS08420 (ABHF33_08420) - 1762392..1763306 (-) 915 WP_348946551.1 HDOD domain-containing protein -
  ABHF33_RS08425 (ABHF33_08425) - 1763485..1764399 (-) 915 WP_348946552.1 LysR substrate-binding domain-containing protein -
  ABHF33_RS08430 (ABHF33_08430) yfcF 1764502..1765131 (+) 630 WP_348946553.1 glutathione transferase -

Sequence

Protein


Download         Length: 499 a.a.        Molecular weight: 53436.09 Da        Isoelectric Point: 7.2922

>NTDB_id=1006241 ABHF33_RS08410 WP_348946549.1 1758824..1760323(+) (comM) [Chitinibacter sp. FCG-7]
MSLAVVYSRALDGMHAQLVTVEVHLANGLPAFNLVGLADTEVREARERVRAAIQVAGFEFPARRITVNLAPADLPKGAGH
YDLAIAIGILAASEQMPIDRLTEFEFAGELGLTGQLRAVRGGLALAIAARDAQRTLIISQCSSAEAALISDASVLAAEHL
LQVCQHFSTQQHESLMPASAPESRPPASYPDLADVKGQLAARRALEIAAAGNHSLLLIGPPGTGKSMLAQRLPGLLPPLT
EHEALEAATVQSLAAKGLDPSRFGQRPFRSPHHTASSVALVGGGSVPQPGEISLAHHGILFLDELPEYDRKVLEVLREPL
ENGKIHISRAAHQAEFPAQFQLVAAMNPCPCGYLGHPKKACRCTPEQVARYRGRISGPLLDRIDMVVEVGALADDVLLSR
DAGEASAPVRQRVTQARQRQLLRQHKHNAALLSQAVDEHCQPDTAGLALLQNAVNRLGWSARAYHRVLRVARTVADLAGS
DSIGSQHIAEAIQYRRGIE

Nucleotide


Download         Length: 1500 bp        

>NTDB_id=1006241 ABHF33_RS08410 WP_348946549.1 1758824..1760323(+) (comM) [Chitinibacter sp. FCG-7]
ATGTCATTGGCAGTGGTGTATTCGCGCGCTTTAGACGGTATGCACGCTCAATTGGTGACGGTTGAAGTGCATCTGGCCAA
CGGCCTGCCTGCTTTTAATCTGGTCGGGCTGGCCGACACCGAAGTGCGCGAGGCCAGAGAACGGGTGCGTGCCGCCATTC
AGGTGGCTGGGTTTGAATTTCCGGCACGGCGCATTACGGTCAATCTGGCACCAGCCGATTTGCCCAAAGGCGCAGGGCAT
TACGATCTGGCGATTGCTATCGGTATTTTGGCGGCCAGCGAGCAAATGCCGATTGATCGGCTGACTGAGTTTGAATTTGC
TGGCGAGCTGGGCTTGACCGGGCAATTGCGCGCAGTTCGTGGCGGTCTGGCGCTGGCTATTGCCGCCCGGGACGCCCAGC
GCACGCTGATTATCAGCCAGTGCAGCAGCGCGGAAGCGGCACTGATTAGCGATGCCAGCGTACTGGCTGCCGAGCATTTA
CTGCAAGTATGCCAGCACTTCAGCACCCAGCAACACGAATCCCTGATGCCAGCCAGCGCTCCCGAATCACGCCCGCCAGC
CAGTTACCCTGATCTGGCCGATGTTAAAGGCCAACTGGCAGCAAGGCGAGCACTGGAAATCGCAGCGGCGGGCAATCATT
CGCTACTGCTAATCGGCCCGCCAGGCACTGGCAAATCAATGCTGGCGCAACGCCTGCCCGGGCTATTGCCGCCACTGACC
GAACACGAAGCGCTGGAAGCGGCCACGGTACAATCACTGGCCGCCAAAGGGCTAGACCCCAGCCGCTTTGGTCAGCGCCC
CTTTCGATCGCCGCACCATACCGCATCCAGCGTCGCGCTGGTTGGCGGTGGCAGTGTGCCGCAACCCGGAGAAATCTCGC
TGGCGCACCATGGCATTCTGTTTCTTGACGAGCTACCCGAATACGATCGCAAAGTGCTCGAAGTGCTGCGCGAGCCGCTG
GAGAACGGCAAAATCCATATCTCGCGCGCCGCGCATCAGGCGGAATTTCCGGCTCAGTTTCAGCTGGTTGCCGCGATGAA
TCCCTGCCCGTGCGGCTATCTGGGGCATCCGAAAAAAGCCTGCCGCTGCACACCCGAACAGGTAGCGCGTTATCGTGGCC
GCATCTCCGGGCCGCTGCTGGACCGGATTGATATGGTGGTCGAAGTCGGGGCACTGGCCGATGATGTGCTGCTAAGCCGA
GATGCGGGCGAAGCCAGTGCGCCGGTCAGGCAGCGGGTGACTCAGGCGCGCCAGCGTCAGCTGCTGCGCCAGCACAAACA
CAACGCAGCGCTATTGAGTCAGGCCGTTGACGAGCATTGCCAGCCCGACACCGCTGGCTTGGCCTTGCTGCAAAATGCCG
TCAATCGCCTGGGCTGGTCAGCGCGCGCCTATCATCGCGTTTTGCGTGTAGCGCGCACCGTCGCCGATCTGGCGGGCAGT
GATTCGATTGGCAGCCAGCATATTGCCGAAGCCATTCAGTACCGGCGCGGGATTGAATAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-495)

Subunit ChlI of Mg-chelatase (ChlI)

(21-139)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

52.505

100

0.525
  comM Vibrio campbellii strain DS40M4

51.815

99.399

0.515
  comM Vibrio cholerae strain A1552

51.613

99.399

0.513
  comM Glaesserella parasuis strain SC1401

50.099

100

0.505
  comM Legionella pneumophila str. Paris

47.929

100

0.487
  comM Legionella pneumophila strain ERS1305867

47.929

100

0.487
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.219

100

0.455

Multiple sequence alignment