Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   QUD59_RS08905 Genome accession   NZ_AP027292
Coordinates   1926103..1927605 (+) Length   500 a.a.
NCBI ID   WP_286240933.1    Uniprot ID   -
Organism   Neptuniibacter halophilus strain LMG 25378     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1921103..1932605
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QUD59_RS08880 glnK 1921651..1921989 (-) 339 WP_286240927.1 P-II family nitrogen regulator -
  QUD59_RS08885 - 1922188..1923444 (-) 1257 WP_286240929.1 ammonium transporter -
  QUD59_RS08890 - 1923483..1923821 (-) 339 WP_286240930.1 P-II family nitrogen regulator -
  QUD59_RS08895 - 1924112..1924366 (+) 255 WP_286240931.1 accessory factor UbiK family protein -
  QUD59_RS08900 - 1924403..1926049 (+) 1647 WP_286240932.1 diguanylate cyclase -
  QUD59_RS08905 comM 1926103..1927605 (+) 1503 WP_286240933.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  QUD59_RS08910 - 1927624..1929174 (-) 1551 WP_286240934.1 GGDEF domain-containing response regulator -
  QUD59_RS08915 rep 1929574..1931583 (+) 2010 WP_286240935.1 DNA helicase Rep -
  QUD59_RS08920 - 1931635..1932054 (-) 420 WP_286240936.1 c-type cytochrome -

Sequence

Protein


Download         Length: 500 a.a.        Molecular weight: 53764.85 Da        Isoelectric Point: 7.0849

>NTDB_id=100619 QUD59_RS08905 WP_286240933.1 1926103..1927605(+) (comM) [Neptuniibacter halophilus strain LMG 25378]
MSLAIALTRAQVGISAPPVSVEVHLSPGLPCFSIVGLPEAAVRESRERVRSALINSGFEFPQRRITVNLAPADLPKEGGR
YDLAIALGILCASAQVPEQALSHYELIGELALSGSLRPVNALLPAALACRDAQRQLILPVDNGQDALIASGLTVLPAAHL
LAVCAHLRGECLLQPAEPQSGANQPVVAGPDLCEVKGQLQAKRALEIAAAGGHNLLMVGPPGSGKSMLAHRLPGLLPSMT
EAEQLEVAAIHSLTQSAVTGLPQQRPFRAPHHTASSVALVGGGSHPRPGEISLAHQGVIFLDELPEFSRQVLEVLREPME
SGQILISRAVRQAVFPAGFQLIAAMNPCPCGYFSDPSGRCRCSPDQVRRYQSKISGPLLDRIDLQLSVQALKRDELLAES
EQSETSEQVRLRVEQSRLRQLARQGCPNQALQGKLLEQSCALQEEDRQLLASALERLNLSARAYHRVLRVARTVADLAGE
ETLQRRHLLEALSYRLTELS

Nucleotide


Download         Length: 1503 bp        

>NTDB_id=100619 QUD59_RS08905 WP_286240933.1 1926103..1927605(+) (comM) [Neptuniibacter halophilus strain LMG 25378]
ATGTCACTTGCAATTGCACTGACCCGGGCTCAGGTCGGGATCAGTGCTCCACCGGTTTCGGTGGAGGTTCATCTCTCACC
GGGCCTGCCCTGTTTTTCTATTGTCGGATTGCCTGAAGCGGCGGTGCGCGAAAGTCGGGAGCGGGTGCGCAGTGCCCTGA
TCAACTCCGGCTTTGAGTTTCCGCAACGTCGTATCACGGTTAATCTGGCCCCGGCAGACCTGCCGAAAGAGGGAGGGCGC
TATGATCTGGCGATTGCCCTTGGCATCCTCTGTGCCAGTGCTCAGGTGCCTGAGCAGGCTTTATCCCACTATGAGCTGAT
CGGTGAACTGGCCTTATCCGGTAGTTTGCGACCTGTGAATGCTCTGCTGCCGGCGGCGCTGGCCTGCCGGGATGCTCAGC
GTCAGTTGATTCTGCCTGTGGATAACGGTCAGGACGCACTGATCGCCTCCGGTTTAACGGTATTGCCAGCCGCGCACCTG
TTAGCGGTTTGTGCACACCTCAGGGGGGAGTGTCTCCTGCAGCCCGCAGAACCACAATCGGGAGCGAATCAACCCGTTGT
CGCAGGCCCTGACCTGTGTGAGGTGAAAGGCCAGCTTCAGGCGAAACGGGCCTTAGAGATTGCGGCTGCCGGGGGGCATA
ATCTGTTAATGGTCGGGCCTCCGGGCAGTGGTAAAAGTATGCTGGCGCATCGTTTACCCGGCCTGTTGCCTTCAATGACT
GAGGCTGAACAACTGGAGGTGGCGGCTATTCACTCGCTAACGCAGAGTGCTGTTACGGGGCTGCCTCAGCAACGCCCTTT
CAGGGCGCCACATCATACGGCCTCTTCTGTCGCACTGGTGGGCGGTGGCAGTCATCCGCGTCCGGGTGAGATCTCGCTGG
CGCATCAGGGGGTAATATTCCTTGATGAGTTGCCGGAGTTCAGTCGTCAGGTGCTGGAGGTGTTGCGTGAACCTATGGAA
TCCGGCCAGATTCTGATTTCCCGGGCGGTGCGGCAGGCGGTTTTTCCTGCCGGATTTCAGTTGATTGCGGCGATGAACCC
CTGCCCCTGTGGATATTTCTCGGATCCCTCCGGGCGCTGCCGCTGCAGCCCTGATCAGGTGCGTCGTTACCAGTCGAAAA
TTTCCGGGCCGCTGCTGGACAGGATCGATCTCCAGTTGAGTGTGCAGGCGTTGAAACGGGATGAGTTGCTGGCAGAATCA
GAACAGAGCGAAACCAGTGAACAGGTGCGTCTCAGAGTTGAGCAGAGCCGGTTGCGTCAGTTGGCGCGTCAGGGGTGTCC
GAATCAGGCGTTACAGGGGAAATTGCTGGAACAGTCATGTGCTTTGCAGGAGGAGGACCGGCAACTGCTGGCTTCGGCAC
TGGAACGATTGAATCTGTCTGCACGGGCTTACCATCGGGTGTTACGGGTGGCACGGACGGTGGCAGATCTGGCAGGAGAG
GAAACACTGCAGCGGCGGCATTTGCTGGAGGCGCTCAGTTATCGTCTGACTGAGCTGAGCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-395)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(404-495)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.839

99.2

0.544
  comM Vibrio campbellii strain DS40M4

53.4

100

0.534
  comM Legionella pneumophila strain ERS1305867

51.889

100

0.522
  comM Legionella pneumophila str. Paris

51.889

100

0.522
  comM Glaesserella parasuis strain SC1401

52

100

0.52
  comM Haemophilus influenzae Rd KW20

51.503

99.8

0.514
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.061

99

0.456

Multiple sequence alignment