Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ABKP29_RS21800 Genome accession   NZ_CP157332
Coordinates   4558034..4559554 (+) Length   506 a.a.
NCBI ID   WP_349335800.1    Uniprot ID   -
Organism   Enterobacter hormaechei strain 2024CK-00534     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4553034..4564554
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABKP29_RS21775 (ABKP29_21775) ilvE 4554600..4555529 (-) 930 WP_022649776.1 branched-chain-amino-acid transaminase -
  ABKP29_RS21780 (ABKP29_21780) ilvM 4555548..4555811 (-) 264 WP_003860184.1 acetolactate synthase 2 small subunit -
  ABKP29_RS21785 (ABKP29_21785) ilvG 4555808..4557454 (-) 1647 WP_022649777.1 acetolactate synthase 2 catalytic subunit -
  ABKP29_RS21790 (ABKP29_21790) ilvX 4557457..4557507 (-) 51 WP_166792073.1 peptide IlvX -
  ABKP29_RS21795 (ABKP29_21795) ilvL 4557594..4557692 (-) 99 WP_001311244.1 ilv operon leader peptide -
  ABKP29_RS21800 (ABKP29_21800) comM 4558034..4559554 (+) 1521 WP_349335800.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ABKP29_RS21805 (ABKP29_21805) - 4559581..4559919 (-) 339 WP_006808641.1 DUF413 domain-containing protein -
  ABKP29_RS21810 (ABKP29_21810) hdfR 4560038..4560859 (+) 822 WP_022649779.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54736.72 Da        Isoelectric Point: 7.3360

>NTDB_id=1005963 ABKP29_RS21800 WP_349335800.1 4558034..4559554(+) (comM) [Enterobacter hormaechei strain 2024CK-00534]
MSLSVVYTRAAIGVKAPLISVEVHLSNGLPGLTLVGLPETTVKEARDRVRSAIINSGYAFPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLNTPGLSSCEFVGELALTGALRGVPGAISGALEAIRAGRQIIVANENASEVSLIAEKGCLVAGHL
QEVCAWLEGRHELAEPQENEEVVADSPDDLSDIMGQEQGKRALEITAAGGHNLLLIGPTGTGKTMLASRLSGLLPPLNNH
EALESAAIFSLVSSISLHKQWRRRPFRSPHHSASLTAMVGGGSIPGPGEISLAHNGILFLDELPEFERRVLDALREPIES
GEIHLSRTRAKISYPAQFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLSKLSGPFLDRFDLSLEIPLPPPGLLRQTGIKG
ESSAVVRERVIAAQARQYARQNRLNARLDNSGIRQFCSLNAEDAGWLEETLTRFGLSIRAWQRLLKVARTVADVEGCPGI
ERRHLQEALSYRAIDRLLLHLQKMLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=1005963 ABKP29_RS21800 WP_349335800.1 4558034..4559554(+) (comM) [Enterobacter hormaechei strain 2024CK-00534]
ATGTCACTGTCAGTTGTTTATACACGCGCGGCCATCGGCGTGAAGGCACCGCTTATTTCTGTAGAGGTTCATTTAAGTAA
TGGACTGCCCGGACTGACGCTGGTCGGCTTACCCGAAACGACCGTTAAGGAGGCCAGGGATCGCGTGCGCAGCGCAATTA
TTAATAGCGGTTATGCTTTTCCGGCGAAGAAGATCACCATCAACCTTGCGCCCGCCGATTTGCCAAAGGAGGGAGGGCGA
TATGATTTACCTATTGCTATAGCGCTTCTCGCGGCTTCTGAACAGCTCAATACGCCAGGGTTAAGCTCGTGCGAGTTCGT
GGGTGAATTAGCGCTTACAGGCGCGTTAAGAGGCGTTCCCGGAGCAATCTCGGGTGCGCTTGAAGCCATACGCGCGGGAA
GGCAAATCATTGTGGCCAATGAAAATGCCTCTGAAGTCAGCCTTATCGCCGAAAAGGGGTGTCTTGTCGCGGGACATTTG
CAGGAGGTTTGCGCCTGGCTGGAAGGCCGACACGAGCTTGCCGAGCCGCAGGAGAATGAGGAGGTAGTGGCAGATTCACC
CGATGACCTCAGCGATATTATGGGTCAGGAACAGGGTAAGCGGGCGTTAGAAATAACGGCCGCGGGTGGGCATAACCTGC
TACTGATAGGTCCGACAGGCACGGGGAAAACGATGCTGGCGAGCAGGTTGAGCGGCCTGCTGCCCCCCCTCAATAATCAC
GAAGCGCTGGAAAGCGCCGCGATATTTAGCCTGGTCAGTTCAATATCGCTGCATAAACAGTGGCGCCGCCGTCCTTTCCG
CTCGCCACACCACAGTGCGTCTCTTACCGCGATGGTGGGCGGGGGCTCAATTCCCGGACCGGGTGAAATCTCACTGGCAC
ACAACGGCATTCTGTTCCTGGATGAATTGCCAGAGTTTGAACGCCGCGTGCTGGATGCGTTGCGGGAGCCGATTGAATCC
GGCGAAATCCATCTGTCTCGTACACGCGCCAAAATAAGCTACCCTGCGCAGTTTCAGCTGGTCGCCGCGATGAATCCTAG
CCCAACGGGCCATTATCAGGGCAACCATAACCGCTGTACGCCGGAGCAGACGCTGCGCTATCTGAGTAAGCTGTCCGGCC
CCTTCCTCGACCGTTTTGATTTATCTCTCGAGATCCCCCTGCCACCGCCCGGTCTGCTGAGGCAAACCGGTATCAAAGGC
GAAAGCTCAGCAGTGGTGCGAGAACGGGTTATTGCGGCTCAGGCGCGGCAGTATGCTCGTCAGAACAGGCTGAATGCCCG
GCTGGATAACAGCGGGATCCGACAGTTTTGCTCTCTCAACGCCGAAGATGCAGGCTGGCTGGAAGAGACACTGACGCGGT
TTGGGTTATCCATTCGCGCGTGGCAGCGTTTGTTGAAAGTTGCGCGCACGGTCGCTGACGTGGAGGGCTGCCCCGGAATA
GAGAGGCGACATTTGCAGGAGGCATTAAGCTACCGTGCGATCGATCGGCTGCTGTTGCATCTGCAAAAAATGCTGGCATA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

58.743

100

0.591
  comM Glaesserella parasuis strain SC1401

58.185

100

0.583
  comM Vibrio campbellii strain DS40M4

58.449

99.407

0.581
  comM Vibrio cholerae strain A1552

58.367

99.209

0.579
  comM Legionella pneumophila str. Paris

49.296

98.221

0.484
  comM Legionella pneumophila strain ERS1305867

49.296

98.221

0.484
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.195

100

0.433

Multiple sequence alignment