Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   QUD44_RS02440 Genome accession   NZ_AP027275
Coordinates   489102..490106 (+) Length   334 a.a.
NCBI ID   WP_096368585.1    Uniprot ID   -
Organism   Lactococcus formosensis strain MS200408A     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 484102..495106
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QUD44_RS02420 (LFMS200408A_04710) - 484486..485190 (+) 705 WP_096368588.1 Bax inhibitor-1/YccA family protein -
  QUD44_RS02425 (LFMS200408A_04720) - 485240..486064 (-) 825 WP_096368587.1 HAD family hydrolase -
  QUD44_RS02430 (LFMS200408A_04730) - 486427..487848 (+) 1422 WP_017368901.1 NCS2 family permease -
  QUD44_RS02435 (LFMS200408A_04740) - 487926..489026 (+) 1101 WP_096368586.1 YdcF family protein -
  QUD44_RS02440 (LFMS200408A_04750) coiA 489102..490106 (+) 1005 WP_096368585.1 competence protein CoiA family protein Machinery gene
  QUD44_RS02445 (LFMS200408A_04760) pepF 490090..491895 (+) 1806 WP_096368584.1 oligoendopeptidase F Regulator
  QUD44_RS02450 (LFMS200408A_04770) - 491895..492578 (+) 684 WP_096368583.1 O-methyltransferase -
  QUD44_RS02455 (LFMS200408A_04780) - 492676..493584 (+) 909 WP_017368906.1 peptidyl-prolyl cis-trans isomerase -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 39986.88 Da        Isoelectric Point: 7.9506

>NTDB_id=100580 QUD44_RS02440 WP_096368585.1 489102..490106(+) (coiA) [Lactococcus formosensis strain MS200408A]
MLNALDKDGNTINLFDDKPINPPFYCPACKSSLRLKRGKIKIPHFAHISLQNCDSWSESESAQHLGLKLSLYQWLKEKEK
VELEKYVPEIKQTADLLVNDKLAIEIQCSPLSLQRLEERTVSYKEKGYYVLWLQGRDLWLKKTLSSLQKNLLYYSVERGF
YFWELDWDRKKLRLKSLIHQDLKGRLICLTEEFDFFQESLLELLRQPFLKGENLSIDVPEQEELQFFIQKQLYYQVPKWI
KVQEKYYEQGKNLLDLNWKKCYWAPPGLNLLTFDFINERSESFFQVDTSLEKYYQGFYESFQSQEHERLHTPSYYAIIKD
KNKVKNGEWHGKKT

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=100580 QUD44_RS02440 WP_096368585.1 489102..490106(+) (coiA) [Lactococcus formosensis strain MS200408A]
ATGTTGAATGCATTGGATAAAGACGGAAATACAATTAATCTCTTTGATGATAAACCCATTAATCCCCCTTTTTATTGCCC
AGCTTGCAAGTCGTCCCTGCGTTTAAAAAGAGGAAAGATAAAAATACCTCACTTTGCGCACATATCTTTACAAAATTGTG
ATTCTTGGAGTGAAAGCGAATCTGCACAACATCTGGGTTTAAAACTTAGCTTATACCAATGGCTTAAGGAAAAAGAGAAA
GTAGAGCTAGAAAAATATGTGCCAGAGATTAAGCAAACGGCTGATTTGTTAGTGAATGATAAACTTGCCATCGAAATACA
GTGTTCGCCACTCTCTTTACAACGTTTAGAAGAGAGAACGGTAAGCTACAAAGAAAAGGGATATTATGTACTTTGGCTTC
AAGGAAGGGATTTGTGGCTCAAGAAGACCTTATCATCGCTACAGAAAAATTTGCTCTATTATTCAGTAGAGCGAGGTTTT
TACTTTTGGGAGTTAGATTGGGACAGAAAGAAGCTACGTTTAAAATCATTGATTCATCAGGATTTAAAAGGTCGACTGAT
ATGTCTTACGGAAGAGTTTGATTTTTTCCAAGAGAGTCTCTTAGAACTCTTACGTCAGCCTTTTCTCAAAGGAGAAAATC
TTAGTATAGATGTACCAGAGCAAGAAGAGTTACAGTTTTTTATTCAAAAACAACTGTATTATCAAGTGCCAAAATGGATT
AAAGTGCAAGAAAAATATTATGAACAGGGTAAAAATTTGTTAGATCTCAACTGGAAGAAATGTTACTGGGCACCTCCAGG
ACTAAACTTATTGACCTTTGACTTTATAAACGAAAGAAGTGAAAGTTTTTTTCAAGTGGATACTTCCTTAGAAAAATATT
ATCAAGGCTTCTACGAAAGTTTTCAGTCACAAGAACATGAAAGACTGCATACACCAAGCTACTATGCTATAATTAAAGAT
AAAAATAAAGTGAAAAACGGAGAATGGCATGGCAAAAAAACGTGA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(1-261)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Lactococcus lactis subsp. cremoris KW2

51.829

98.204

0.509
  coiA Streptococcus pneumoniae Rx1

42.073

98.204

0.413
  coiA Streptococcus pneumoniae D39

42.073

98.204

0.413
  coiA Streptococcus pneumoniae R6

42.073

98.204

0.413
  coiA Streptococcus pneumoniae TIGR4

41.768

98.204

0.41
  coiA Streptococcus mitis NCTC 12261

41.463

98.204

0.407

Multiple sequence alignment