Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   QUD44_RS02445 Genome accession   NZ_AP027275
Coordinates   490090..491895 (+) Length   601 a.a.
NCBI ID   WP_096368584.1    Uniprot ID   -
Organism   Lactococcus formosensis strain MS200408A     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 485090..496895
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QUD44_RS02425 (LFMS200408A_04720) - 485240..486064 (-) 825 WP_096368587.1 HAD family hydrolase -
  QUD44_RS02430 (LFMS200408A_04730) - 486427..487848 (+) 1422 WP_017368901.1 NCS2 family permease -
  QUD44_RS02435 (LFMS200408A_04740) - 487926..489026 (+) 1101 WP_096368586.1 YdcF family protein -
  QUD44_RS02440 (LFMS200408A_04750) coiA 489102..490106 (+) 1005 WP_096368585.1 competence protein CoiA family protein Machinery gene
  QUD44_RS02445 (LFMS200408A_04760) pepF 490090..491895 (+) 1806 WP_096368584.1 oligoendopeptidase F Regulator
  QUD44_RS02450 (LFMS200408A_04770) - 491895..492578 (+) 684 WP_096368583.1 O-methyltransferase -
  QUD44_RS02455 (LFMS200408A_04780) - 492676..493584 (+) 909 WP_017368906.1 peptidyl-prolyl cis-trans isomerase -
  QUD44_RS02460 (LFMS200408A_04790) alaS 493832..496450 (+) 2619 WP_096368582.1 alanine--tRNA ligase -

Sequence

Protein


Download         Length: 601 a.a.        Molecular weight: 69858.26 Da        Isoelectric Point: 4.5653

>NTDB_id=100581 QUD44_RS02445 WP_096368584.1 490090..491895(+) (pepF) [Lactococcus formosensis strain MS200408A]
MAKKRDEIAENLTWDLSTVFENDAAWELELKSVSEKLETVNRYEGHLLESAQSLLEITEVELEISRAVEKVYVYASMKHD
QDTQVSRYQEYEARATNLYAKFGEMFAFYEPEFLALTPERYESFRREEPKLEQYSHMFERLFAKKEHILSPKEEKLLASA
SEIFGAAAETFEIFDNADIELPMIKDEKGQEVQLTHGNYISLMESKDRHVRKAAYQALYSNYEQYQHTYAKTLQTNVKVH
NFKAKTRGYDSARQAALSSNFIPEEVYDRLLESVNKYLPLLHRYIKLREQILGLDDDLKMYDVYTPLSDLDYKFNYPEAV
EKAEEVLQVFGPEYAAHVKKAFDERWIDVAENIGKRSGAYSGGCYDTNAFMLLNWQETLDDLFTLVHEMGHSMHSTFTRE
NQPYVYGDYPIFLAEIASTTNENILTESLLAETTDEKERFAILNHWLDGFRGTVFRQSQFAEFEHEIHKADQEGKVLTSE
FMNQLYAGLNEKYYSLPALENPEIQYEWARIPHFYYNYYVFQYATGFAAATYLAEAIVNGGSEAREKYLTYLKAGSSDYP
LAVIAQAGVDMEEITYLESAFAVFEKRLIELENLVEKGVHL

Nucleotide


Download         Length: 1806 bp        

>NTDB_id=100581 QUD44_RS02445 WP_096368584.1 490090..491895(+) (pepF) [Lactococcus formosensis strain MS200408A]
ATGGCAAAAAAACGTGATGAAATAGCTGAAAACTTAACTTGGGATTTGTCAACCGTATTTGAAAATGATGCCGCCTGGGA
ACTTGAACTTAAAAGTGTCTCGGAAAAGTTAGAGACGGTAAACCGCTACGAAGGACATCTTTTAGAGAGTGCTCAAAGCT
TATTAGAAATCACGGAAGTTGAGCTAGAGATTTCGCGCGCTGTGGAAAAAGTTTATGTCTATGCTTCAATGAAGCATGAT
CAAGATACACAAGTGAGTCGTTACCAAGAATATGAAGCTAGGGCTACAAATTTATATGCTAAGTTCGGTGAAATGTTTGC
CTTTTATGAGCCGGAATTTTTAGCTTTAACGCCAGAACGTTATGAGAGTTTTAGAAGAGAAGAGCCTAAGTTGGAACAGT
ATTCTCATATGTTTGAACGCCTTTTTGCTAAAAAAGAGCATATTTTAAGTCCAAAAGAGGAAAAGCTGTTAGCCAGTGCC
AGTGAGATTTTTGGTGCAGCTGCCGAAACTTTCGAAATTTTTGACAATGCTGATATTGAGCTTCCGATGATTAAAGATGA
AAAAGGGCAGGAAGTACAGCTGACACATGGTAATTATATCTCGCTCATGGAAAGTAAGGACCGTCATGTGCGAAAGGCAG
CTTATCAAGCCCTTTATAGCAACTATGAACAGTATCAGCACACTTATGCTAAAACGCTACAAACAAATGTAAAAGTCCAT
AATTTTAAGGCGAAGACACGTGGGTATGATTCAGCCCGTCAAGCAGCTTTATCAAGTAATTTTATTCCGGAAGAAGTTTA
CGATAGGCTTTTGGAGTCGGTTAATAAATATTTGCCTCTTTTACATCGCTATATTAAATTACGCGAGCAAATTTTAGGTT
TAGATGATGATTTGAAGATGTATGATGTCTACACACCCTTATCTGACTTGGATTATAAGTTTAACTATCCAGAAGCAGTA
GAGAAAGCAGAAGAAGTTCTTCAAGTTTTCGGCCCTGAGTATGCAGCACATGTTAAAAAAGCTTTTGATGAGCGTTGGAT
TGATGTAGCAGAAAATATTGGCAAACGTTCTGGTGCATACTCGGGAGGATGCTATGATACAAATGCCTTTATGCTCTTAA
ACTGGCAAGAAACTTTGGATGATTTGTTTACCTTAGTTCATGAAATGGGACACAGTATGCATTCTACATTTACACGAGAA
AATCAACCTTATGTTTATGGGGATTATCCAATCTTTCTTGCAGAAATTGCCTCAACAACCAATGAAAATATCTTGACGGA
AAGTTTACTTGCGGAGACGACAGATGAAAAAGAGCGTTTTGCCATTTTAAACCACTGGCTTGATGGCTTCCGGGGAACCG
TTTTTCGTCAAAGCCAATTTGCTGAATTTGAACATGAGATTCATAAAGCTGATCAAGAAGGAAAGGTCTTGACCAGTGAA
TTCATGAACCAGCTCTACGCAGGTCTTAATGAGAAGTATTATAGTTTGCCTGCTCTAGAAAATCCTGAAATTCAGTACGA
GTGGGCACGCATTCCACATTTTTATTATAATTATTATGTTTTCCAATATGCAACAGGCTTTGCAGCAGCAACTTATCTTG
CAGAGGCTATCGTAAATGGTGGCTCAGAAGCGCGTGAAAAATACCTCACTTATCTCAAAGCTGGATCAAGTGATTATCCG
CTGGCTGTGATTGCTCAAGCAGGTGTAGATATGGAAGAAATAACGTATTTAGAATCGGCTTTTGCTGTTTTTGAAAAACG
TTTAATTGAGCTGGAAAATTTAGTCGAAAAAGGAGTCCATTTATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(202-582)

Oligopeptidase F (Peptidase_M3_N)

(112-180)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

65.058

100

0.651

Multiple sequence alignment