Detailed information NTG1005607

Bioinformatically predicted

Overview

• Name: comGD
• Type: Machinery gene
• Locus tag: FGL05_RS08215
• Genome accession: NZ_LR594044
• Coordinates: 1669622..1670053 (-)
• Length: 143 a.a.
• NCBI ID: WP_020915990.1
• Uniprot ID: A0AB33AJ27
• Organism: Streptococcus lutetiensis strain NCTC8796
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1664622..1675053

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FGL05_RS08170 (NCTC8796_01722)	-	1664689..1665324 (-)	636	WP_111712559.1	type II CAAX endopeptidase family protein	-
FGL05_RS08175 (NCTC8796_01723)	-	1665339..1665794 (-)	456	WP_231853254.1	ABC transporter permease	-
FGL05_RS08180 (NCTC8796_01724)	-	1665795..1665995 (-)	201	WP_058814360.1	hypothetical protein	-
FGL05_RS08185 (NCTC8796_01725)	-	1666012..1666209 (-)	198	WP_020915996.1	helix-turn-helix transcriptional regulator	-
FGL05_RS08190 (NCTC8796_01726)	-	1666369..1667568 (-)	1200	WP_020915995.1	acetate kinase	-
FGL05_RS08195 (NCTC8796_01727)	comGH	1667622..1668578 (-)	957	WP_020915994.1	class I SAM-dependent methyltransferase	Machinery gene
FGL05_RS08200 (NCTC8796_01728)	comGG	1668632..1668982 (-)	351	WP_020915993.1	competence type IV pilus minor pilin ComGG	Machinery gene
FGL05_RS08205 (NCTC8796_01729)	comGF	1668954..1669391 (-)	438	WP_043894883.1	competence type IV pilus minor pilin ComGF	Machinery gene
FGL05_RS08210 (NCTC8796_01730)	comGE	1669375..1669668 (-)	294	WP_020915991.1	competence type IV pilus minor pilin ComGE	Machinery gene
FGL05_RS08215 (NCTC8796_01731)	comGD	1669622..1670053 (-)	432	WP_020915990.1	competence type IV pilus minor pilin ComGD	Machinery gene
FGL05_RS08220 (NCTC8796_01732)	comGC	1670037..1670330 (-)	294	WP_020915989.1	competence type IV pilus major pilin ComGC	Machinery gene
FGL05_RS08225 (NCTC8796_01733)	comGB	1670330..1671373 (-)	1044	WP_020915988.1	competence type IV pilus assembly protein ComGB	Machinery gene
FGL05_RS08230 (NCTC8796_01734)	comGA	1671297..1672238 (-)	942	WP_020915987.1	competence type IV pilus ATPase ComGA	Machinery gene
FGL05_RS08235 (NCTC8796_01735)	-	1672310..1672678 (-)	369	WP_020915986.1	DUF1033 family protein	-

Sequence

Protein

• Length: 143 a.a.
• Molecular weight: 16157.52 Da
• Isoelectric Point: 8.7942

>NTDB_id=1005607 FGL05_RS08215 WP_020915990.1 1669622..1670053(-) (comGD) [Streptococcus lutetiensis strain NCTC8796]
MRLKNKAFYAFTLIESLLTLAISCFMVIMLSGSVNHIFQSVDETLFFLSFENLYRDTQKLASIKQESQTLQISQDAISNG
ITSVKVPKTVLVDKNYQLVFDKSGGNSSLTKIQFHTENQAIDYQLYIGSGNYKKTETKSLHTP

Nucleotide

• Length: 432 bp

>NTDB_id=1005607 FGL05_RS08215 WP_020915990.1 1669622..1670053(-) (comGD) [Streptococcus lutetiensis strain NCTC8796]
ATGCGGCTAAAAAATAAAGCTTTTTACGCCTTTACCCTTATCGAAAGTTTGCTGACTTTAGCAATTTCTTGTTTTATGGT
CATCATGCTATCAGGTTCGGTCAATCATATTTTTCAATCGGTCGATGAAACTTTGTTCTTTCTTTCCTTTGAAAATCTTT
ATCGCGATACACAAAAATTGGCTAGTATTAAGCAGGAAAGTCAGACTTTGCAGATATCGCAAGATGCGATTTCAAATGGA
ATCACTAGTGTTAAGGTTCCTAAAACTGTATTGGTTGACAAGAATTATCAGCTTGTTTTTGATAAATCAGGGGGTAATTC
ATCTCTTACCAAGATACAGTTTCATACAGAAAACCAGGCAATCGATTATCAATTGTACATAGGAAGTGGTAACTATAAAA
AAACAGAAACTAAAAGCTTACATACTCCTTGA

Domains

No domain identified.

3D structure

• AlphaFold DB: A0AB33AJ27

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comGD	Streptococcus mutans UA140	54.264	90.21	0.49
comGD	Streptococcus mutans UA159	54.264	90.21	0.49
comGD	Streptococcus gordonii str. Challis substr. CH1	45.185	94.406	0.427
comGD/cglD	Streptococcus pneumoniae Rx1	44.615	90.909	0.406
comGD/cglD	Streptococcus pneumoniae D39	44.615	90.909	0.406
comGD/cglD	Streptococcus pneumoniae R6	44.615	90.909	0.406
comGD/cglD	Streptococcus mitis NCTC 12261	44.615	90.909	0.406
comGD/cglD	Streptococcus pneumoniae TIGR4	43.846	90.909	0.399
comGD/cglD	Streptococcus mitis SK321	43.846	90.909	0.399