Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   FGL05_RS06680 Genome accession   NZ_LR594044
Coordinates   1361186..1361848 (-) Length   220 a.a.
NCBI ID   WP_020916320.1    Uniprot ID   A0AB33AKC5
Organism   Streptococcus lutetiensis strain NCTC8796     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1356186..1366848
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL05_RS06675 (NCTC8796_01419) raiA 1360561..1361109 (-) 549 WP_058813685.1 ribosome-associated translation inhibitor RaiA -
  FGL05_RS06680 (NCTC8796_01420) comFC/cflB 1361186..1361848 (-) 663 WP_020916320.1 ComF family protein Machinery gene
  FGL05_RS06685 (NCTC8796_01421) comFA/cflA 1361848..1363146 (-) 1299 WP_020916319.1 DEAD/DEAH box helicase Machinery gene
  FGL05_RS06690 (NCTC8796_01422) - 1363201..1363827 (+) 627 WP_111712652.1 YigZ family protein -
  FGL05_RS06695 (NCTC8796_01423) cysK 1363927..1364856 (+) 930 WP_020916317.1 cysteine synthase A -
  FGL05_RS06700 (NCTC8796_01424) - 1364955..1365311 (-) 357 WP_020916316.1 S1 RNA-binding domain-containing protein -
  FGL05_RS09615 (NCTC8796_01425) - 1365311..1366711 (-) 1401 WP_081048448.1 Cof-type HAD-IIB family hydrolase -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 25771.04 Da        Isoelectric Point: 9.4680

>NTDB_id=1005585 FGL05_RS06680 WP_020916320.1 1361186..1361848(-) (comFC/cflB) [Streptococcus lutetiensis strain NCTC8796]
MKCLLCGQDFSEKEIFLGIISIRKNNYLVCPECHNIFEKIGDVHCPTCYRKDYKEQCEDCKKWAKENHKVSHRALYTYNE
AMKEYFSKYKFQGDAMLSNVFAKEVKQVLKNYKGYTIIPVPLSKERMKERQFNQITAILNAAKIPYHDILEKKDIKKQSE
KSRKERLTSDCPFRIKSDSQIPDKVLILDDIYTTGATLKGIYHLFYEKGAKIVKSLTIAR

Nucleotide


Download         Length: 663 bp        

>NTDB_id=1005585 FGL05_RS06680 WP_020916320.1 1361186..1361848(-) (comFC/cflB) [Streptococcus lutetiensis strain NCTC8796]
ATGAAATGCCTCCTTTGTGGACAAGACTTTTCTGAGAAAGAAATATTTTTAGGAATTATTTCAATACGTAAAAATAATTA
TTTGGTTTGTCCAGAGTGCCATAATATCTTTGAAAAGATTGGTGATGTGCATTGTCCTACTTGTTATCGAAAAGACTACA
AAGAGCAATGTGAAGATTGTAAAAAGTGGGCAAAAGAAAATCACAAGGTTTCTCATCGAGCACTTTATACTTATAATGAA
GCCATGAAAGAGTATTTTTCTAAATACAAATTTCAAGGAGATGCTATGTTAAGTAATGTTTTTGCAAAAGAAGTCAAACA
AGTCTTGAAGAATTACAAAGGCTATACTATTATTCCAGTACCCTTAAGTAAAGAAAGGATGAAAGAAAGACAATTTAACC
AAATTACAGCCATTCTAAATGCTGCCAAAATTCCCTATCATGATATTTTAGAGAAGAAGGATATTAAAAAGCAATCTGAA
AAAAGTAGAAAAGAAAGATTGACGAGTGATTGCCCGTTTAGGATTAAATCAGACAGCCAGATACCAGATAAAGTATTAAT
TCTTGATGATATTTACACAACGGGAGCAACTTTAAAAGGAATTTATCACTTATTTTATGAAAAAGGAGCAAAGATTGTAA
AAAGTTTAACAATTGCACGGTAA

Domains

Predicted by InterProScan.

Phosphoribosyl transferase domain (Pribosyltran)

(138-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0AB33AKC5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus pneumoniae TIGR4

45

100

0.45
  comFC/cflB Streptococcus pneumoniae Rx1

45

100

0.45
  comFC/cflB Streptococcus pneumoniae D39

45

100

0.45
  comFC/cflB Streptococcus pneumoniae R6

45

100

0.45
  comFC/cflB Streptococcus mitis NCTC 12261

45

100

0.45
  comFC/cflB Streptococcus mitis SK321

43.636

100

0.436
  comFC Bacillus subtilis subsp. subtilis str. 168

35.242

100

0.364