Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   FGL06_RS02285 Genome accession   NZ_LR594042
Coordinates   437099..437764 (+) Length   221 a.a.
NCBI ID   WP_126437634.1    Uniprot ID   -
Organism   Streptococcus equinus strain NCTC8133     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 432099..442764
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL06_RS02260 (NCTC8133_00453) - 432263..433663 (+) 1401 WP_029876003.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -
  FGL06_RS02265 (NCTC8133_00454) - 433663..434019 (+) 357 WP_027968108.1 S1 RNA-binding domain-containing protein -
  FGL06_RS02270 (NCTC8133_00455) cysK 434093..435022 (-) 930 WP_021141798.1 cysteine synthase A -
  FGL06_RS02275 (NCTC8133_00456) - 435120..435746 (-) 627 WP_126437632.1 YigZ family protein -
  FGL06_RS02280 (NCTC8133_00457) comFA/cflA 435801..437099 (+) 1299 WP_126437633.1 DEAD/DEAH box helicase Machinery gene
  FGL06_RS02285 (NCTC8133_00458) comFC/cflB 437099..437764 (+) 666 WP_126437634.1 ComF family protein Machinery gene
  FGL06_RS02290 (NCTC8133_00459) hpf 437841..438389 (+) 549 WP_024344660.1 ribosome hibernation-promoting factor, HPF/YfiA family -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25426.50 Da        Isoelectric Point: 9.4488

>NTDB_id=1005348 FGL06_RS02285 WP_126437634.1 437099..437764(+) (comFC/cflB) [Streptococcus equinus strain NCTC8133]
MEKCLLCDQLFLEKETFLGIISIQKNQRNVCPDCLAAFEKIGDKHCPTCYRNGCETQCKDCQKWEKEGHSVKHQAIFTYN
AAMKNYFSKYKFQGDVALGAIFSRELKKKIKPYKNYSIVPVPLSRERMTERKFNQVTALLDASGIAYQEILSKKNITKQS
DKNRKERLESQCPFHVKPDSNIPKNILIIDDIYTTGATLKGIYHLLYEKGAQNVKSLTIAR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=1005348 FGL06_RS02285 WP_126437634.1 437099..437764(+) (comFC/cflB) [Streptococcus equinus strain NCTC8133]
ATGGAAAAGTGTTTGTTATGTGACCAATTATTTCTTGAAAAAGAAACTTTTTTGGGTATCATTTCTATTCAAAAAAATCA
AAGAAATGTTTGTCCTGATTGTCTCGCTGCTTTTGAAAAAATAGGAGATAAGCACTGCCCAACTTGTTATCGAAATGGTT
GTGAAACGCAGTGTAAAGATTGTCAAAAATGGGAAAAGGAAGGGCATTCTGTCAAGCATCAGGCAATTTTTACCTATAAT
GCTGCCATGAAAAATTATTTTTCAAAGTACAAATTTCAAGGAGACGTAGCACTTGGTGCAATTTTTTCTAGAGAGCTTAA
GAAAAAAATAAAGCCGTACAAAAATTACAGCATCGTGCCAGTCCCTTTAAGTAGAGAGCGCATGACGGAACGTAAATTTA
ATCAAGTTACTGCCTTATTGGACGCTTCTGGAATAGCCTATCAAGAAATTTTATCAAAGAAAAATATCACTAAACAATCA
GATAAAAACAGAAAAGAAAGGCTTGAAAGCCAGTGTCCATTTCATGTCAAGCCAGATAGTAATATTCCCAAAAATATTTT
AATCATTGACGACATCTATACGACTGGCGCTACACTAAAAGGCATTTATCATCTTCTTTATGAAAAAGGTGCACAGAATG
TAAAAAGTTTAACAATTGCACGGTAA

Domains

Predicted by InterProScan.

Phosphoribosyl transferase domain (Pribosyltran)

(184-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis SK321

47.032

99.095

0.466
  comFC/cflB Streptococcus mitis NCTC 12261

46.119

99.095

0.457
  comFC/cflB Streptococcus pneumoniae TIGR4

46.119

99.095

0.457
  comFC/cflB Streptococcus pneumoniae Rx1

46.119

99.095

0.457
  comFC/cflB Streptococcus pneumoniae D39

46.119

99.095

0.457
  comFC/cflB Streptococcus pneumoniae R6

46.119

99.095

0.457
  comFC Bacillus subtilis subsp. subtilis str. 168

36.123

100

0.371

Multiple sequence alignment