Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AABA75_RS18545 Genome accession   NZ_AP027272
Coordinates   4221925..4222494 (-) Length   189 a.a.
NCBI ID   WP_338294220.1    Uniprot ID   A0AA48I0S3
Organism   Planctobacterium marinum strain Dej080120_11     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4216925..4227494
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABA75_RS18530 (MACH26_36580) - 4217352..4217927 (-) 576 WP_338294217.1 response regulator -
  AABA75_RS18535 (MACH26_36590) - 4218078..4220357 (-) 2280 WP_338294218.1 winged helix-turn-helix domain-containing protein -
  AABA75_RS18540 (MACH26_36600) - 4220615..4221826 (+) 1212 WP_338294219.1 serine hydrolase -
  AABA75_RS18545 (MACH26_36610) ssb 4221925..4222494 (-) 570 WP_338294220.1 single-stranded DNA-binding protein Machinery gene
  AABA75_RS18550 (MACH26_36620) - 4222503..4223855 (-) 1353 WP_338294221.1 MFS transporter -
  AABA75_RS18555 (MACH26_36630) uvrA 4224026..4226860 (+) 2835 WP_338294222.1 excinuclease ABC subunit UvrA -
  AABA75_RS18560 (MACH26_36640) - 4226873..4227268 (+) 396 WP_338294223.1 thioesterase family protein -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 20654.71 Da        Isoelectric Point: 5.7570

>NTDB_id=100514 AABA75_RS18545 WP_338294220.1 4221925..4222494(-) (ssb) [Planctobacterium marinum strain Dej080120_11]
MASRGINKVIIVGNLGQNPEVKYMPNGNAVTNISVATSESWKDQQGQLQERTEWHRIVMFRKLAEIAGQYLTKGSQVYIE
GKLQTRKWQDQNGQDRYTTEIVADNMQMLGGRQGGGNEGGGYQPNQGMQGGGAPQQAPSYQQMPNQGGGQPNRGGHQGGG
NQGGFNQAPKQPSQPMQEPDFDFDDDIPF

Nucleotide


Download         Length: 570 bp        

>NTDB_id=100514 AABA75_RS18545 WP_338294220.1 4221925..4222494(-) (ssb) [Planctobacterium marinum strain Dej080120_11]
ATGGCCAGCAGAGGTATTAACAAGGTTATTATCGTAGGTAACTTGGGGCAAAACCCTGAGGTGAAATACATGCCAAACGG
TAATGCCGTTACAAACATCAGCGTAGCCACCAGTGAAAGCTGGAAAGATCAGCAAGGCCAATTGCAAGAGCGCACCGAAT
GGCACCGTATCGTTATGTTCCGTAAACTGGCTGAGATTGCAGGACAATACCTGACTAAAGGTTCGCAAGTTTATATCGAA
GGTAAACTGCAAACCCGCAAGTGGCAGGACCAAAATGGCCAAGACCGTTACACCACGGAAATCGTTGCTGACAACATGCA
AATGTTAGGTGGTCGCCAGGGGGGAGGTAACGAAGGCGGTGGTTATCAGCCGAATCAAGGTATGCAAGGTGGTGGTGCGC
CGCAGCAAGCGCCAAGCTATCAGCAAATGCCCAATCAAGGCGGCGGTCAACCGAATCGCGGTGGTCATCAGGGAGGCGGT
AATCAAGGTGGTTTCAATCAAGCGCCGAAACAACCTTCGCAGCCTATGCAAGAGCCAGATTTCGACTTTGACGACGATAT
TCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

56.842

100

0.571
  ssb Vibrio cholerae strain A1552

54.822

100

0.571
  ssb Neisseria meningitidis MC58

49.73

97.884

0.487
  ssb Neisseria gonorrhoeae MS11

49.73

97.884

0.487

Multiple sequence alignment