Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   FGL04_RS10325 Genome accession   NZ_LR594035
Coordinates   1999275..1999868 (-) Length   197 a.a.
NCBI ID   WP_138069092.1    Uniprot ID   -
Organism   Streptococcus pseudoporcinus strain NCTC5385     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1994275..2004868
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL04_RS10295 (NCTC5385_02228) ruvX 1994507..1994926 (-) 420 WP_077323211.1 Holliday junction resolvase RuvX -
  FGL04_RS10300 (NCTC5385_02229) - 1994923..1995192 (-) 270 WP_003083367.1 IreB family regulatory phosphoprotein -
  FGL04_RS10305 (NCTC5385_02230) spx 1995304..1995702 (-) 399 WP_138069088.1 transcriptional regulator Spx -
  FGL04_RS10310 (NCTC5385_02231) recA 1996107..1997249 (-) 1143 WP_138069089.1 recombinase RecA Machinery gene
  FGL04_RS10315 (NCTC5385_02232) cinA 1997339..1998598 (-) 1260 WP_138069090.1 competence/damage-inducible protein A Machinery gene
  FGL04_RS10320 (NCTC5385_02233) - 1998714..1999268 (-) 555 WP_138069091.1 DNA-3-methyladenine glycosylase I -
  FGL04_RS10325 (NCTC5385_02234) ruvA 1999275..1999868 (-) 594 WP_138069092.1 Holliday junction branch migration protein RuvA Machinery gene
  FGL04_RS10330 (NCTC5385_02235) - 1999870..2001093 (-) 1224 WP_138069093.1 MFS transporter -
  FGL04_RS10335 (NCTC5385_02236) hexB 2001104..2003071 (-) 1968 WP_138069094.1 DNA mismatch repair endonuclease MutL Machinery gene

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 22035.47 Da        Isoelectric Point: 6.8830

>NTDB_id=1005083 FGL04_RS10325 WP_138069092.1 1999275..1999868(-) (ruvA) [Streptococcus pseudoporcinus strain NCTC5385]
MFDYIKGQLTKITAKYIVVEVNGLGYIIYVANPYSFTDSVNQNVIVYLHQVIREDAHLLFGFHTDNEKDVFLKLISVSGI
GPMTALAIVAVDDNQGLVTAIDNSDIKYLMKFPKIGKKTAQQMILDLAGKFVDNPEPGQQQSQAKRNSNHQLDEAIEALL
ALGYKATELKKIRAFFEGTEETAERYIKSALKMLMKG

Nucleotide


Download         Length: 594 bp        

>NTDB_id=1005083 FGL04_RS10325 WP_138069092.1 1999275..1999868(-) (ruvA) [Streptococcus pseudoporcinus strain NCTC5385]
ATGTTTGACTATATAAAAGGGCAATTAACAAAAATTACTGCTAAATATATTGTTGTAGAGGTAAATGGTCTAGGTTATAT
TATCTATGTGGCTAACCCTTATAGCTTTACAGATAGTGTCAACCAAAATGTGATTGTTTATCTGCATCAAGTGATTAGAG
AAGATGCTCATCTTTTATTTGGCTTTCATACAGATAATGAAAAGGATGTTTTTTTAAAACTCATTTCTGTTTCGGGTATT
GGTCCCATGACTGCTTTAGCTATTGTTGCTGTGGACGATAACCAGGGCTTAGTTACAGCTATTGACAATAGTGATATTAA
GTACTTAATGAAGTTCCCTAAAATTGGTAAAAAGACGGCACAGCAAATGATTCTCGACCTTGCTGGCAAGTTTGTGGACA
ATCCAGAGCCTGGTCAGCAGCAGAGCCAAGCTAAGCGAAATAGTAATCACCAGCTTGACGAAGCTATCGAGGCCCTCTTA
GCGCTAGGCTATAAAGCAACAGAGTTGAAGAAGATTAGGGCTTTCTTTGAAGGAACAGAGGAAACGGCTGAGCGGTATAT
CAAGTCAGCTTTGAAAATGTTAATGAAGGGGTAA

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(152-195)

RuvA N terminal domain (RuvA_N)

(1-61)

Helix-hairpin-helix domain (HHH_5)

(71-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

64.5

100

0.655
  ruvA Streptococcus pneumoniae R6

64.646

100

0.65
  ruvA Streptococcus pneumoniae D39

64.646

100

0.65
  ruvA Bacillus subtilis subsp. subtilis str. 168

40.887

100

0.421

Multiple sequence alignment