Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AABA11_RS13850 Genome accession   NZ_AP027271
Coordinates   2933765..2935276 (-) Length   503 a.a.
NCBI ID   WP_338268830.1    Uniprot ID   -
Organism   Marinomonas pontica strain 200518_36     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2928765..2940276
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABA11_RS13830 (MACH16_26870) - 2929278..2929607 (+) 330 WP_338269696.1 c-type cytochrome -
  AABA11_RS13835 (MACH16_26880) rep 2929629..2931677 (-) 2049 WP_338268824.1 DNA helicase Rep -
  AABA11_RS13840 (MACH16_26890) - 2931821..2932738 (-) 918 WP_338268826.1 bile acid:sodium symporter family protein -
  AABA11_RS13845 (MACH16_26900) - 2932875..2933657 (-) 783 WP_338268828.1 hypothetical protein -
  AABA11_RS13850 (MACH16_26910) comM 2933765..2935276 (-) 1512 WP_338268830.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AABA11_RS13855 (MACH16_26920) - 2935380..2935595 (+) 216 WP_338268832.1 TIGR02450 family Trp-rich protein -
  AABA11_RS13860 (MACH16_26930) - 2935618..2935857 (-) 240 WP_265727374.1 accessory factor UbiK family protein -
  AABA11_RS13865 (MACH16_26940) glnK 2936340..2936678 (+) 339 WP_110576897.1 P-II family nitrogen regulator -
  AABA11_RS13870 (MACH16_26950) - 2936716..2937981 (+) 1266 WP_265727373.1 ammonium transporter -
  AABA11_RS13875 (MACH16_26960) - 2938162..2939694 (+) 1533 WP_265727372.1 carbon-nitrogen hydrolase family protein -

Sequence

Protein


Download         Length: 503 a.a.        Molecular weight: 54439.36 Da        Isoelectric Point: 7.7988

>NTDB_id=100494 AABA11_RS13850 WP_338268830.1 2933765..2935276(-) (comM) [Marinomonas pontica strain 200518_36]
MSLATIYSRARVGVSSPLVTVETHISNGLPSLNIVGLPEAAVRESKDRVRSAIINSHFEFPTRRVTINLAPADLPKEGGR
YDLAIAISVLVASGQLGDLHLRDTEFIGELALSGDIRGVPGLLPSAIACQQANRQLILPEDNQQEAALVEGNAVFAKHLT
QVTAHLLKQAALPACVSKPIEPLPLDHKDMRDVKGQYQARRALEVAAAGGHNLLFIGPAGTGKTMLASRLPSIMPAMTEA
EALAVASVQSVAGRKMGLDWHWSERPFRSPHHSCSAAALVGGGSIPKPGEASLAHCGVLFLDELPEFDRKVLEVLREPLE
NGEVHISRARGQVTFPARFQLVAAMNASNEAYNGGQDYYQSSASQKYLKKLSAPFLDRIDLHVEVPPLPSNVLVNADEEG
ECSASVRQRVEVAVARQRARQGVQNAQLSGRQLEAICALSQEDKQFMQQALEKLKLSARAYHRVLKVALTLADLNDSPVT
RAHLMESLSYRKMEKTLSMAVSS

Nucleotide


Download         Length: 1512 bp        

>NTDB_id=100494 AABA11_RS13850 WP_338268830.1 2933765..2935276(-) (comM) [Marinomonas pontica strain 200518_36]
ATGAGTTTAGCTACCATCTATAGTCGTGCCCGTGTGGGTGTGTCTTCCCCGTTAGTGACGGTCGAAACCCACATTTCAAA
CGGACTGCCTTCTTTAAATATAGTGGGACTTCCAGAAGCCGCTGTACGAGAATCAAAAGATCGTGTGCGCAGCGCGATCA
TCAACAGTCATTTCGAATTTCCTACCCGGCGCGTCACTATCAATTTAGCACCCGCCGATTTACCCAAAGAGGGTGGCCGT
TATGATTTGGCCATTGCCATTAGTGTCTTAGTGGCCTCGGGACAACTGGGTGATCTACACCTTCGCGACACTGAGTTTAT
TGGCGAGTTGGCGTTGTCGGGCGATATTCGTGGTGTGCCGGGTTTGCTGCCATCCGCCATTGCATGCCAACAGGCGAACA
GGCAATTGATCCTTCCAGAAGACAATCAACAAGAAGCGGCATTAGTGGAAGGCAATGCGGTGTTTGCTAAGCATTTGACG
CAAGTAACGGCGCATTTATTAAAGCAAGCCGCGCTGCCTGCGTGTGTGTCTAAGCCAATTGAACCTTTGCCGTTAGACCA
CAAAGACATGCGCGATGTAAAAGGCCAATACCAAGCTCGTCGAGCCTTAGAAGTGGCCGCTGCGGGCGGGCATAATCTAT
TGTTTATTGGGCCTGCTGGAACGGGAAAAACCATGTTGGCGTCACGTTTACCCAGTATCATGCCTGCGATGACAGAAGCC
GAAGCGTTGGCGGTGGCGTCAGTGCAATCGGTCGCAGGACGAAAAATGGGGTTGGATTGGCATTGGTCTGAACGACCTTT
TCGATCGCCGCACCATTCTTGTTCGGCTGCGGCGTTGGTGGGAGGCGGATCGATACCAAAACCGGGAGAAGCGTCGTTGG
CGCATTGTGGTGTTTTGTTCTTAGATGAGCTGCCAGAGTTCGACCGAAAAGTGCTCGAAGTGTTGCGTGAACCTTTAGAG
AATGGCGAAGTACACATCTCGCGTGCTCGTGGCCAAGTCACTTTCCCCGCCCGTTTTCAGCTAGTCGCAGCAATGAATGC
CAGTAACGAAGCGTACAATGGAGGGCAAGATTATTATCAATCCAGCGCCAGCCAAAAATACCTCAAAAAACTGTCCGCGC
CTTTTTTAGACCGTATTGATTTGCACGTTGAAGTGCCGCCGTTGCCGTCCAATGTGTTGGTTAACGCGGATGAAGAAGGG
GAGTGCAGTGCCAGTGTGCGTCAGCGTGTTGAGGTGGCAGTGGCCAGGCAGCGTGCTCGACAGGGCGTGCAAAATGCGCA
GCTAAGTGGCCGTCAGTTGGAAGCCATTTGCGCGTTAAGCCAGGAAGATAAACAGTTTATGCAACAGGCGCTGGAAAAAT
TGAAATTGTCTGCGCGTGCTTATCATCGGGTGTTGAAAGTTGCGCTTACCTTAGCCGATCTAAATGACTCTCCTGTTACC
AGAGCGCATTTAATGGAATCCTTGAGTTATCGCAAGATGGAAAAAACCTTGTCGATGGCGGTGTCGTCTTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-390)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.2

99.404

0.539
  comM Glaesserella parasuis strain SC1401

52.778

100

0.529
  comM Vibrio campbellii strain DS40M4

53

99.404

0.527
  comM Haemophilus influenzae Rd KW20

52.475

100

0.527
  comM Legionella pneumophila str. Paris

47.189

99.006

0.467
  comM Legionella pneumophila strain ERS1305867

47.189

99.006

0.467
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.217

100

0.443

Multiple sequence alignment