Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   FGK95_RS10870 Genome accession   NZ_LR590625
Coordinates   1551267..1551689 (-) Length   140 a.a.
NCBI ID   WP_093999504.1    Uniprot ID   -
Organism   Streptococcus canis strain B700072     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1546267..1556689
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGK95_RS07810 - 1549636..1550587 (+) 952 Protein_1460 IS30 family transposase -
  FGK95_RS07815 (SAMEA5186854_01581) hpf 1550639..1551187 (-) 549 WP_093999503.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  FGK95_RS10870 comFC/cflB 1551267..1551689 (-) 423 WP_093999504.1 ComF family protein Machinery gene
  FGK95_RS07825 (SAMEA5186854_01583) comFA/cflA 1551904..1553229 (-) 1326 WP_093999505.1 DEAD/DEAH box helicase Machinery gene
  FGK95_RS07830 (SAMEA5186854_01584) - 1553285..1553917 (+) 633 WP_093999506.1 YigZ family protein -
  FGK95_RS07835 (SAMEA5186854_01585) cysK 1554035..1554970 (+) 936 WP_003044700.1 cysteine synthase A -
  FGK95_RS07845 tnpA 1555243..1555707 (-) 465 Protein_1466 IS200/IS605 family transposase -
  FGK95_RS07850 (SAMEA5186854_01588) - 1555895..1556254 (-) 360 WP_093998981.1 S1 RNA-binding domain-containing protein -

Sequence

Protein


Download         Length: 140 a.a.        Molecular weight: 16406.82 Da        Isoelectric Point: 9.8720

>NTDB_id=1004887 FGK95_RS10870 WP_093999504.1 1551267..1551689(-) (comFC/cflB) [Streptococcus canis strain B700072]
MKAYFRQYKFQGDYLLRNVFAQELAEIIYQNYQGYVPVPVPISDKRYQERNFNQVSAILEAGKVRYHQIFEKHDDSRQSS
KTKKERLLTKNSYHLLEGVEIPPRILIVDDIYTTGSTIMALKKQLLQFGNSDIKSLSIAR

Nucleotide


Download         Length: 423 bp        

>NTDB_id=1004887 FGK95_RS10870 WP_093999504.1 1551267..1551689(-) (comFC/cflB) [Streptococcus canis strain B700072]
ATGAAAGCCTATTTCAGACAATATAAATTCCAAGGAGACTATTTATTAAGGAATGTCTTTGCTCAGGAATTAGCAGAAAT
CATTTATCAGAACTATCAAGGATATGTCCCTGTCCCAGTACCTATAAGCGACAAACGTTACCAAGAACGGAATTTTAATC
AGGTGAGCGCTATACTTGAGGCTGGTAAAGTTCGTTACCATCAAATTTTTGAAAAACATGATGATAGCCGTCAATCTTCA
AAGACGAAAAAGGAGCGCTTGTTGACTAAAAATTCTTATCATTTACTTGAAGGAGTCGAAATTCCCCCTAGAATCCTCAT
TGTTGATGATATTTATACCACTGGTAGTACCATTATGGCTTTGAAAAAGCAGTTACTACAATTTGGAAATAGTGACATCA
AAAGTTTGTCGATTGCACGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis SK321

45

100

0.45
  comFC/cflB Streptococcus mitis NCTC 12261

45

100

0.45
  comFC/cflB Streptococcus pneumoniae Rx1

45

100

0.45
  comFC/cflB Streptococcus pneumoniae D39

45

100

0.45
  comFC/cflB Streptococcus pneumoniae R6

45

100

0.45
  comFC/cflB Streptococcus pneumoniae TIGR4

45

100

0.45
  comFC Lactococcus lactis subsp. cremoris KW2

43.262

100

0.436